okey...it is happening again.
IMPORTANT...the errors show only in eclipse. If I execute the code directly 
in maya´s interpreter, I don´t get any error. (  have eclipse connect to 
maya, and I get the error when I exceute the code in eclipse only
I also notice this happens when I duplicate a code and change some 
variables. For example, here I am programing spine that could be bipedal or 
quadruped. So I did the code for bipedal,
and then duplicated the code and changed the variables bipedal to quadruped.
I get the following errors :

// Error: ...python("#!/usr/bin/env python\n# -*- coding: utf-8 
-*-\n\"\"\"------------------------------------------------------------------ 
// 
// Error: Line 1.5842: Unterminated string. // 
// Error: ...python("#!/usr/bin/env python\n# -*- coding: utf-8 
-*-\n\"\"\"------------------------------------------------------------------ 
// 
// Error: Line 1.5842: Unterminated string. // 

the errors above happen randomly. Sometimes it work, some time it doesn´t 
and give the errors shown

and here is the code. Justin, I used pastebin to clone the code and paste 
here. Is this okey?


#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""---------------------------------------------------------------------------[ 
REQUISITOS 
]-----------------------------------------------------------------------------"""
# modules
import maya.cmds as cmds
import coreUtilities.globalUtilities as gu
import coreUtilities.mathUtilities as mu 
import setupTools.riggingTools as rt
import sys
# class objects
mathUtilities = mu.MathUtilities()
getUtilities = gu.GetUtilities()
genericRiggingTools = rt.GenericRiggingTools()

"""---------------------------------------------------------------------------[ 
CLASSES 
]-----------------------------------------------------------------------------"""


class CreaturePoints(object):
    
    # static variables
    axis = ["x","y","z"]
        
    def bipedalChestPoint(self,chestParent="",intermediateChest=False):
        
        
"""--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
        description: crea puntos torso, y debuggea cualquier error. Puede 
ser uno o varios torsos bipedos
            Los puntos se emparentan a lo declarado o seleccionado. Si se 
crea mas de un torso, se renombar automaticamente
            # arg1-chestParent : el seleccionado o el declarado
            # arg3-intermediateChest : crea joint intermedia en 
chest                   
        use: ejecutar con declaraciones o seleccino
        status: final
        author: rudi hammad
        
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"""
                
        #--[DEBUGGING]--#
        # 1.si no existi hip       
        if cmds.objExists("c_hip_loc")!=True:
            cmds.warning( "no c_hip_loc found in the scene. Please create a 
hip locator before running the script" )
            sys.exit()
        # 2.chestParent debe ser declarado o elegido
        if not chestParent:
            selection = cmds.ls(sl=True)
            # seleccionar un objeto solo para emparentar
            if len(selection) > 1 or len(selection) == 0 :
                cmds.warning(" none or more than on object selected. Please 
select only one ")
                sys.exit()
            else:
                chestParent = selection[0]            
        else:
            chestParent = chestParent
            # si el input declarado no existe
            if cmds.objExists(chestParent)!=True :
                cmds.warning( "chestParent input not valid, please insert 
an existing object as argument" )
                sys.exit()
           
                                                                               

        #--[MAIN CODE]--#
        #--[if chest exists]--#
        if cmds.objExists("c_bipedChest_loc")==True:
            # si ya existe un extra 
            try:
                cmds.select( "c_bipedExtra*Chest_loc", r=True)
                chests = cmds.ls( sl=True )
                numberOfChest = len(chests)
                extraLetter = chr(ord("A")+(numberOfChest))
                toAdd = "Extra" + extraLetter
                newChest = "c_biped" + toAdd + "Chest"
            # si no exist extra
            except:
                " no extra chests found..."
                newChest = "c_bipedExtraAChest"
            # chest locator
            pos = cmds.xform( chestParent, q=True, t=True, ws=True )
            cmds.spaceLocator( n=newChest + "_loc"); cmds.xform( 
t=(pos[0],pos[1]*1.5,pos[2]) ); cmds.setAttr( ".overrideEnabled",1 ); 
cmds.setAttr( ".overrideColor",20 )
            cmds.spaceLocator( n=newChest + "End_loc" ); cmds.xform( 
t=(pos[0],pos[1]*2,pos[2]) ) 
            # properties           
            for elem in self.axis:
                cmds.setAttr( newChest + "_loc" + " Shape.localScale" + 
elem.upper(), 5 )
                cmds.setAttr( newChest + "End_loc" + " Shape.localScale" + 
elem.upper(), 5 )                            
            # parenting
            cmds.parent( newChest + "End_loc", newChest + "_loc")
            cmds.parent( newChest + "_loc", chestParent )
            # lineas  
            genericRiggingTools.lineBetweenTwoObjects(newChest + 
"_loc",chestParent)    
            genericRiggingTools.lineBetweenTwoObjects(newChest + 
"_loc",newChest + "End_loc")                                    
            # extraChest
            if intermediateChest == True:
                cmds.spaceLocator( n=newChest + "Inter_loc" ); cmds.xform( 
t=(pos[0],pos[1]*1.85,pos[2]) )
                cmds.parent( newChest + "Inter_loc", newChest + "End_loc")
                for elem in self.axis:
                    cmds.setAttr( newChest + "Inter_loc" + 
"Shape.localScale" + elem.upper(), 2.5 )
                                      
        #--[end]--#       
        cmds.select( cl=True )


    def quadrupedChestPoint(self,chestParent="",intermediateChest=False):
        
        
"""--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
        description: crea puntos torso, y debuggea cualquier error. Puede 
ser uno o varios torsos quadrupedos
            Los puntos se emparentan a lo declarado o seleccionado. Si se 
crea mas de un torso, se renombar automaticamente
            # arg1-chestParent : el seleccionado o el declarado
            # arg3-intermediateChest : crea joint intermedia en 
chest                   
        use: ejecutar con declaraciones o seleccino
        status: final
        author: rudi hammad
        
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"""
                
        #--[DEBUGGING]--#
        # 1.si ni existi hip       
        if cmds.objExists("c_hip_loc")!=True:
            cmds.warning( "no c_hip_loc found in the scene. Please create a 
hip locator before running the script" )
            sys.exit()
        # 2.chestParent should be declared o selected
        if not chestParent:
            selection = cmds.ls(sl=True)
            # select only one object to parent
            if len(selection) > 1 or len(selection) == 0 :
                cmds.warning(" none or more than on object selected. Please 
select only one ")
                sys.exit()
            else:
                chestParent = selection[0]            
        else:
            chestParent = chestParent
            # si el input declarado no existe
            if cmds.objExists(chestParent)!=True :
                cmds.warning( "chestParent input not valid, please insert 
an existing object as argument" )
                sys.exit()
           
                                                                               

        #--[MAIN CODE]--#
        #--[if chest exists]--#
        if cmds.objExists("c_quadChest_loc")==True:
            # si ya existe un extra 
            try:
                cmds.select( "c_quadExtra*Chest_loc", r=True)
                chests = cmds.ls( sl=True )
                numberOfChest = len(chests)
                extraLetter = chr(ord("A")+(numberOfChest))
                toAdd = "Extra" + extraLetter
                newChest = "c_quad" + toAdd + "Chest"
            # si no exist extra
            except:
                " no extra chests found..."
                newChest = "c_quadExtraAChest"
            # chest locator
            pos = cmds.xform( chestParent, q=True, t=True, ws=True )
            cmds.spaceLocator( n=newChest + "_loc"); cmds.xform( 
t=(pos[0],pos[1],(pos[2] + pos[1]*0.75)) ); cmds.setAttr( 
".overrideEnabled",1 ); cmds.setAttr( ".overrideColor",20 )
            cmds.spaceLocator( n=newChest + "End_loc" ); cmds.xform( 
t=(pos[0],pos[1],(pos[2] + pos[1]*1.5)) ) 
            # properties           
            for elem in self.axis:
                cmds.setAttr( newChest + "_loc" + " Shape.localScale" + 
elem.upper(), 5 )
                cmds.setAttr( newChest + "End_loc" + " Shape.localScale" + 
elem.upper(), 5 )                            
            # parenting
            cmds.parent( newChest + "End_loc", newChest + "_loc")
            cmds.parent( newChest + "_loc", chestParent )
            # lineas  
            genericRiggingTools.lineBetweenTwoObjects(newChest + 
"_loc",chestParent)    
            genericRiggingTools.lineBetweenTwoObjects(newChest + 
"_loc",newChest + "End_loc")                                    
            # extraChest
            if intermediateChest == True:
                cmds.spaceLocator( n=newChest + "Inter_loc" ); cmds.xform( 
t=(pos[0],pos[1],(pos[2] + pos[1]*1.15)) )
                cmds.parent( newChest + "Inter_loc", newChest + "End_loc")
                for elem in self.axis:
                    cmds.setAttr( newChest + "Inter_loc" + 
"Shape.localScale" + elem.upper(), 2.5 )

        #--[end]--#       
                cmds.select( cl=True )

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