Long time have passed, but I ran into the same issue and finally worked it out. I operate under Windows 8.1 and the problem was that Windows kept a copy of the faulty file inside C:\Users\[my name]\AppData\Local\VirtualStore (or using environnement variable : %APPDATA%\..\Local\VirtualStore ). In that directory, I found a "Program Files (x86)" folder, that contained a "pyzo" directory. Inside the latter was the faulty file (source\pyzo\codeeditor\base.py) with the right timestamp. I juste deleted the whole content of the aforementionned "pyzo" dir, and Pyzo now works back like a charm, without elevated privileges.
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