Hello Agustin,
 
> No, the correct one is the one on the left, which is the one made with
> arcgis. I've made an screenshot
> with transparency:
> https://sites.google.com/site/openfiles2/home/errorgeorefARCG_QGIStransp.jp
> eg?attredirects=0&d=1
> https://sites.google.com/site/openfiles2/home/errorgeorefARCG_QGIStransp.j
> pegw?attredirects=0&d=1

well, with my setup (ca. qgis 1.7), the output of the georeferencer  matches 
the output from ArcGIS pretty accurately (older revision of QGIS, though - 
haven't tested with head). 

See my result, georef output in green:

http://www.warped-space.de/georef-vs-arcgis.jpeg

The qgis georeferencer output can be found here:

http://www.warped-space.de/Ilerfly125v2_modifziert.tif

Please upload the output you got, both ArcGIS and georeferencer, so that
we can rule out problems on the visualization / on-the-fly reprojection
side of things. Also, at this point the exact version of your QGIS/GDAL
setup could be relevant.

There are some possible sources of error for the discrepancy, e.g. gdal, a
faulty entry in the qgis projection database, or user error (well, it happens
:-)).

cheers,

        Manuel
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