> I'm after some advice on how to best bootstrap these applications as I
> don't know of a better way than setting a global javascript variable
> to the id around the time that setApplication is called. e.g.

We do this, from a separate login page which verifies username and password. 
The login page creates the application browser instance as a separate window 
with the normal browser toolbars removed, and sets a global variable in that 
new window to the session ID.

We were then sending that out as a parameter with all our requests to the 
server, but have recently changed to incorporating it into the URI so that we 
can authenticate requests outside our control - FCK Editor stuff to upload 
files to the server.

Hugh

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