I have revisited an earlier approach with some more success.
I attached only the usb controller, not the bridges. This seems to work:

sudo lspci
00:00.0 USB controller: Intel Corporation DSL6340 USB 3.1 Controller [Alpine 
Ridge]
00:01.0 Network controller: Intel Corporation Wireless 7265 (rev 59)

sudo lsusb
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 003 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 002 Device 007: ID 046d:c51e Logitech, Inc. 
Bus 002 Device 006: ID 1e4e:0898 Cubeternet 
Bus 002 Device 005: ID 0572:1703 Conexant Systems (Rockwell), Inc. 
Bus 002 Device 003: ID 05e3:0610 Genesys Logic, Inc. 4-port hub
Bus 002 Device 002: ID 05e3:0610 Genesys Logic, Inc. 4-port hub
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

So some devices are there, like the SD card reader, audio device and the usb 
hubs. The usb hubs even work, the Logitec device is an external keyboard I 
connected.

But the ethernet device is not there, nor the usb ethernet dongle that's also 
connected to the usb hub. Both show up on dom0 if I connect them, but since 
dom0 has no networking, I cannot say if they would work.

I cannot see an error in dmesg either. Am I missing something? Do I need to 
configure something else to enable the network devices in sys-net?

sudo dmesg | grep usb
[    0.087164] usbcore: registered new interface driver usbfs
[    0.087164] usbcore: registered new interface driver hub
[    0.087164] usbcore: registered new device driver usb
[    0.199812] usbcore: registered new interface driver usbserial
[    0.199819] usbcore: registered new interface driver usbserial_generic
[    0.199826] usbserial: USB Serial support registered for generic
[    1.218031] usbcore: registered new interface driver usbhid
[    1.218036] usbhid: USB HID core driver
[    1.899801] usb usb1: New USB device found, idVendor=1d6b, idProduct=0002
[    1.899805] usb usb1: New USB device strings: Mfr=3, Product=2, 
SerialNumber=1
[    1.899809] usb usb1: Product: Dummy host controller
[    1.899813] usb usb1: Manufacturer: Linux 4.4.14-11.pvops.qubes.x86_64 
dummy_hcd
[    1.899817] usb usb1: SerialNumber: dummy_hcd.0
[    2.517386] usb usb2: New USB device found, idVendor=1d6b, idProduct=0002
[    2.517394] usb usb2: New USB device strings: Mfr=3, Product=2, 
SerialNumber=1
[    2.517401] usb usb2: Product: xHCI Host Controller
[    2.517406] usb usb2: Manufacturer: Linux 4.4.14-11.pvops.qubes.x86_64 
xhci-hcd
[    2.517412] usb usb2: SerialNumber: 0000:00:00.0
[    2.517988] usb usb3: New USB device found, idVendor=1d6b, idProduct=0003
[    2.517994] usb usb3: New USB device strings: Mfr=3, Product=2, 
SerialNumber=1
[    2.518018] usb usb3: Product: xHCI Host Controller
[    2.518024] usb usb3: Manufacturer: Linux 4.4.14-11.pvops.qubes.x86_64 
xhci-hcd
[    2.518030] usb usb3: SerialNumber: 0000:00:00.0
[    2.870258] usb 2-1: new high-speed USB device number 2 using xhci_hcd
[    3.039597] usb 2-1: New USB device found, idVendor=05e3, idProduct=0610
[    3.039641] usb 2-1: New USB device strings: Mfr=1, Product=2, SerialNumber=0
[    3.039676] usb 2-1: Product: USB2.1 Hub
[    3.039699] usb 2-1: Manufacturer: GenesysLogic
[    3.333235] usb 2-1.1: new high-speed USB device number 3 using xhci_hcd
[    3.458450] usb 2-1.1: New USB device found, idVendor=05e3, idProduct=0610
[    3.458501] usb 2-1.1: New USB device strings: Mfr=1, Product=2, 
SerialNumber=0
[    3.458545] usb 2-1.1: Product: USB2.0 Hub
[    3.458572] usb 2-1.1: Manufacturer: GenesysLogic
[    3.582241] usb 2-1.3: new low-speed USB device number 4 using xhci_hcd
[    3.697415] usb 2-1.3: New USB device found, idVendor=046d, idProduct=c51e
[    3.697467] usb 2-1.3: New USB device strings: Mfr=0, Product=0, 
SerialNumber=0
[    3.698170] usb 2-1.3: ep 0x81 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[    3.698255] usb 2-1.3: ep 0x82 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[    3.702613] input: HID 046d:c51e as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.3/2-1.3:1.0/0003:046D:C51E.0001/input/input1
[    3.753888] hid-generic 0003:046D:C51E.0001: input,hidraw0: USB HID v1.11 
Keyboard [HID 046d:c51e] on usb-0000:00:00.0-1.3/input0
[    3.762024] input: HID 046d:c51e as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.3/2-1.3:1.1/0003:046D:C51E.0002/input/input2
[    3.814541] hid-generic 0003:046D:C51E.0002: input,hiddev0,hidraw1: USB HID 
v1.11 Mouse [HID 046d:c51e] on usb-0000:00:00.0-1.3/input1
[    3.823050] usb 2-1.1.2: new full-speed USB device number 5 using xhci_hcd
[    4.128399] usb 2-1.1.2: New USB device found, idVendor=0572, idProduct=1703
[    4.128445] usb 2-1.1.2: New USB device strings: Mfr=1, Product=2, 
SerialNumber=3
[    4.128476] usb 2-1.1.2: Product: ASUS USB Audio
[    4.128496] usb 2-1.1.2: Manufacturer: ASUS
[    4.128514] usb 2-1.1.2: SerialNumber: 00000000
sudo dmesg | grep usb
[    0.087164] usbcore: registered new interface driver usbfs
[    0.087164] usbcore: registered new interface driver hub
[    0.087164] usbcore: registered new device driver usb
[    0.199812] usbcore: registered new interface driver usbserial
[    0.199819] usbcore: registered new interface driver usbserial_generic
[    0.199826] usbserial: USB Serial support registered for generic
[    1.218031] usbcore: registered new interface driver usbhid
[    1.218036] usbhid: USB HID core driver
[    1.899801] usb usb1: New USB device found, idVendor=1d6b, idProduct=0002
[    1.899805] usb usb1: New USB device strings: Mfr=3, Product=2, 
SerialNumber=1
[    1.899809] usb usb1: Product: Dummy host controller
[    1.899813] usb usb1: Manufacturer: Linux 4.4.14-11.pvops.qubes.x86_64 
dummy_hcd
[    1.899817] usb usb1: SerialNumber: dummy_hcd.0
[    2.517386] usb usb2: New USB device found, idVendor=1d6b, idProduct=0002
[    2.517394] usb usb2: New USB device strings: Mfr=3, Product=2, 
SerialNumber=1
[    2.517401] usb usb2: Product: xHCI Host Controller
[    2.517406] usb usb2: Manufacturer: Linux 4.4.14-11.pvops.qubes.x86_64 
xhci-hcd
[    2.517412] usb usb2: SerialNumber: 0000:00:00.0
[    2.517988] usb usb3: New USB device found, idVendor=1d6b, idProduct=0003
[    2.517994] usb usb3: New USB device strings: Mfr=3, Product=2, 
SerialNumber=1
[    2.518018] usb usb3: Product: xHCI Host Controller
[    2.518024] usb usb3: Manufacturer: Linux 4.4.14-11.pvops.qubes.x86_64 
xhci-hcd
[    2.518030] usb usb3: SerialNumber: 0000:00:00.0
[    2.870258] usb 2-1: new high-speed USB device number 2 using xhci_hcd
[    3.039597] usb 2-1: New USB device found, idVendor=05e3, idProduct=0610
[    3.039641] usb 2-1: New USB device strings: Mfr=1, Product=2, SerialNumber=0
[    3.039676] usb 2-1: Product: USB2.1 Hub
[    3.039699] usb 2-1: Manufacturer: GenesysLogic
[    3.333235] usb 2-1.1: new high-speed USB device number 3 using xhci_hcd
[    3.458450] usb 2-1.1: New USB device found, idVendor=05e3, idProduct=0610
[    3.458501] usb 2-1.1: New USB device strings: Mfr=1, Product=2, 
SerialNumber=0
[    3.458545] usb 2-1.1: Product: USB2.0 Hub
[    3.458572] usb 2-1.1: Manufacturer: GenesysLogic
[    3.582241] usb 2-1.3: new low-speed USB device number 4 using xhci_hcd
[    3.697415] usb 2-1.3: New USB device found, idVendor=046d, idProduct=c51e
[    3.697467] usb 2-1.3: New USB device strings: Mfr=0, Product=0, 
SerialNumber=0
[    3.698170] usb 2-1.3: ep 0x81 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[    3.698255] usb 2-1.3: ep 0x82 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[    3.702613] input: HID 046d:c51e as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.3/2-1.3:1.0/0003:046D:C51E.0001/input/input1
[    3.753888] hid-generic 0003:046D:C51E.0001: input,hidraw0: USB HID v1.11 
Keyboard [HID 046d:c51e] on usb-0000:00:00.0-1.3/input0
[    3.762024] input: HID 046d:c51e as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.3/2-1.3:1.1/0003:046D:C51E.0002/input/input2
[    3.814541] hid-generic 0003:046D:C51E.0002: input,hiddev0,hidraw1: USB HID 
v1.11 Mouse [HID 046d:c51e] on usb-0000:00:00.0-1.3/input1
[    3.823050] usb 2-1.1.2: new full-speed USB device number 5 using xhci_hcd
[    4.128399] usb 2-1.1.2: New USB device found, idVendor=0572, idProduct=1703
[    4.128445] usb 2-1.1.2: New USB device strings: Mfr=1, Product=2, 
SerialNumber=3
[    4.128476] usb 2-1.1.2: Product: ASUS USB Audio
[    4.128496] usb 2-1.1.2: Manufacturer: ASUS
[    4.128514] usb 2-1.1.2: SerialNumber: 00000000
[    4.232947] input: ASUS ASUS USB Audio as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.1/2-1.1.2/2-1.1.2:1.3/0003:0572:1703.0003/input/input3
[    4.285481] hid-generic 0003:0572:1703.0003: input,hiddev0,hidraw2: USB HID 
v1.11 Device [ASUS ASUS USB Audio] on usb-0000:00:00.0-1.1.2/input3
[    4.390263] usb 2-1.1.4: new full-speed USB device number 6 using xhci_hcd
[    4.501782] usb 2-1.1.4: New USB device found, idVendor=1e4e, idProduct=0898
[    4.501832] usb 2-1.1.4: New USB device strings: Mfr=1, Product=2, 
SerialNumber=3
[    4.501862] usb 2-1.1.4: Product: Billboard Device
[    4.501881] usb 2-1.1.4: Manufacturer: Silicon Laboratories
[    4.501901] usb 2-1.1.4: SerialNumber: 0123456781ABCDEF
[    4.502478] usb 2-1.1.4: ep 0x81 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[    4.502546] usb 2-1.1.4: ep 0x1 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[    4.508725] hid-generic 0003:1E4E:0898.0004: hiddev0,hidraw3: USB HID v1.11 
Device [Silicon Laboratories Billboard Device] on usb-0000:00:00.0-1.1.4/input1
[    4.631236] usbcore: registered new interface driver snd-usb-audio
[   34.400883] usb 2-1.1.2: 2:1: cannot get freq at ep 0x1
[  130.777188] usb 2-1.3: USB disconnect, device number 4
[  133.795215] usb 2-1.3: new low-speed USB device number 7 using xhci_hcd
[  133.908660] usb 2-1.3: New USB device found, idVendor=046d, idProduct=c51e
[  133.908706] usb 2-1.3: New USB device strings: Mfr=0, Product=0, 
SerialNumber=0
[  133.910808] usb 2-1.3: ep 0x81 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[  133.910848] usb 2-1.3: ep 0x82 - rounding interval to 64 microframes, ep 
desc says 80 microframes
[  133.917523] input: HID 046d:c51e as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.3/2-1.3:1.0/0003:046D:C51E.0005/input/input4
[  133.969648] hid-generic 0003:046D:C51E.0005: input,hidraw0: USB HID v1.11 
Keyboard [HID 046d:c51e] on usb-0000:00:00.0-1.3/input0
[  133.978255] input: HID 046d:c51e as 
/devices/pci-0/pci0000:00/0000:00:00.0/usb2/2-1/2-1.3/2-1.3:1.1/0003:046D:C51E.0006/input/input5
[  134.030189] hid-generic 0003:046D:C51E.0006: input,hiddev0,hidraw1: USB HID 
v1.11 Mouse [HID 046d:c51e] on usb-0000:00:00.0-1.3/input1
[  173.750153] usb 2-1.1.3: new high-speed USB device number 8 using xhci_hcd
[  173.864759] usb 2-1.1.3: New USB device found, idVendor=058f, idProduct=6366
[  173.864798] usb 2-1.1.3: New USB device strings: Mfr=1, Product=2, 
SerialNumber=3
[  173.864828] usb 2-1.1.3: Product: Flash Card Reader/Writer
[  173.864848] usb 2-1.1.3: Manufacturer: Generic
[  173.864869] usb 2-1.1.3: SerialNumber: 058F63666485
[  173.913685] usb-storage 2-1.1.3:1.0: USB Mass Storage device detected
[  173.913806] scsi host0: usb-storage 2-1.1.3:1.0
[  173.913876] usbcore: registered new interface driver usb-storage
[  173.915341] usbcore: registered new interface driver uas
[  199.397504] usb 2-1.1.3: USB disconnect, device number 8

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