I want to make clear that in each case, the new kernel has worked
fine once I persuaded my BIOS to boot it. The problem is always
that, after each kernel upgrade, the BIOS no longer recognizes any
bootable partition, not even listing the drive among its boot options.

Unmounting before fsck is the standard process, but I wonder why
and how the dom0 kernel upgrade script leaves the boot partition
in a state that the BIOS will not boot. I am far from certain that the
fsck.vfat was what restored bootability, but something did.

dom0 kernel upgrade should not leave the boot partition in such undesired state,
unless there is some hard to reproduce bug. Otherwise it will get fixed really 
soon.

I do not have whole lot of details about your configuration.. but if you really 
believe this
issue is caused by the dom0 kernel upgrade script, then try to reproduce it in 
a minimal
amount of steps, e.g.:

1. install qubes os of version X.Y.Z with the /boot on FAT FS (+ any other 
custom settings you have, including if you have a dual boot);
2. run qubes-dom0-update kernel-x.y.z;

Otherwise it's hard to help.

You can also inspect the install scripts by yourself:
$ rpm -q --scripts kernel
$ less /bin/kernel-install
Kind regards,
Andrey Arapov

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