>  <<--snip-->>
Though it's not clear to me whether this is actually an issue, I figured
I'd do it anyways. My question is, if I wanted to disable
qubes-update-check service, how would I go about updating my templates
over tor? Do I create debian and fedora templates linked to sys-whonix
just to get updates?

AFAIK the updates themselves run over sys-whonix by default. So, if you
run e.g. "apt-get update" on your debian-10 template, this connection
goes over tor. However, the notification about updates to run (yellow
update wheel widget in the right top corner) goes by standard over
the AppVM and so, most of the time over the clear (as your clock, that
updates over sys-net).

Since user-action is required (by running the update widget, or, as me,
doing it all by hand), the notification is rather uncorrelated to the
download action, I second Marek here.

It is, as always, a convenience-vs-security question. You may uninstall
the qubes-update-check service and run (checks for) updates by hand (or
script) periodically in your template-VMs. The gain is small, the pain
is high, so most people don't do it. That is my pov, maybe there is some
contradicting one?

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