I have an nForce 4 board here, and it has a "spread specturm" option in the BIOS. I believe this option "fuzzes" the processor clock by a few percent in either direction, in order to avoid outputting lots of RF noise on a single frequency. This option was on by defualt on my board. You might want to make sure it is disabled, as it could certainly cause ntpd to do Bad Things.
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