Since we seem to be going around a few times on this I'm going to summarize the current hardware and software configuration of the system so we're all on the same starting point.

The GPS data is read by gpsd on /dev/gps0 which is a symlink to /dev/ttya.

The PPS_ATOM is reading /dev/pps0 which is a symlink to /dev/ttyb.

So two serial ports handling two different parts of the available GPS signals.

The GPS PPS signal is stable. I have kept an eye on it externally including when I've had trouble with ntpd and I have not seen any evidence of trouble with the source.

The OS is NetBSD 5.1 on sparc sun4c (IPX). The oscillator on the system appears to be fine. It did not drift far from its set time with no clock discipline. The system load is minimal, running only ntpd and gpsd plus the standard base system processes.

The current clock configuration of ntpd has the following:

server 0.us.pool.ntp.org iburst
server 1.us.pool.ntp.org iburst
server 0.north-america.pool.ntp.org iburst
server ntp1.gatech.edu
server rolex.usg.edu

server  127.127.22.0  minpoll 4 maxpoll 4
fudge   127.127.22.0  flag2 1 flag3 0 flag4 1 refid PPS

server  127.127.28.0  minpoll 7 noselect
fudge   127.127.28.0  stratum 4 time1 -0.6 flag4 1 refid GPSD


Note that the SHM refclock (the GPSD) is set to noselect. It has been this way for quite a while. All the problems I have been having do not involve GPSD in any way because it is always noselect. I will be using it later on ntpd but I want to get PPS working first. Until then it will stay noselect. Unless the noselect directive is being ignored by ntpd my understanding is that it shouldn't matter if the refclock is present in the configuration.

I have configured PPS_ATOM one of three ways for testing. It has been in noselect, flag 3 disabled, and flag 3 enabled.

Now, under dev version p239, PPS did in fact work fine for a short period of time. After about an hour the system would sync to PPS and I would get the 'o' code. But after some hours of use ntpd would spin out of control with huge multi-second offsets and the clock would tick out of control. This happened with either flag3 setting.

Now I have version p256 because of the snprintf bug in NetBSD's libc. The configure flag --enable-c99-snprintf didn't work properly in p239 but does work in p256. I needed that flag to work around the libc bug. Under this new version, PPS does not work AT ALL. At no time does it ever sync to PPS regardless of the flag3 setting. More interesting is the fact that p256 reports twice the jitter on the PPS signal that p239 did even though none of the hardware or OS components have changed. The only thing that's different is ntpd. With flag3 cleared (no kernel discipline), p256 refuses to ever select PPS regardless of the quality of its signal. It is always marked a false ticker. By comparison p239 didn't have this problem. Version p256 will spin out of control with multi-second offsets if flag3 is enabled. This is the same behavior as version p239.

I am seeing many sys_fuzz messages in version p256 as well.

So that's where things sit right now.
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