I'm not sure which value you are referring to. From the "ntpq -p" billboard over a day, I see values of jitter of the GPS as low as 0.002
Yes, it's that jitter however there's a minimum computed value below which it never goes (varies per system). On my system it used to be computed at 0.061 (and all the configured clocks would report that as an initial jitter until some data came in). On the same system with 4.2.7 the value is now computed to be 0.122.
In any case apparently according to David Hart the code has indeed changed so the computations are different.
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