Addition: After I reboot the embedded ARM system time is in sync with the 
windows box and ntp.log shows this:

# cat /tmp/ntp.2021-05-18T13\:29\:43\+0200.log
18 May 13:29:43 ntpd[1224]: proto: precision = 0.666 usec
18 May 13:29:43 ntpd[1224]: ntp_io: estimated max descriptors: 1024, initial 
socket boundary: 16
18 May 13:29:43 ntpd[1224]: Listen and drop on 0 v4wildcard 0.0.0.0 UDP 123
18 May 13:29:43 ntpd[1224]: Listen and drop on 1 v6wildcard :: UDP 123
18 May 13:29:43 ntpd[1224]: Listen normally on 2 lo 127.0.0.1 UDP 123
18 May 13:29:43 ntpd[1224]: Listen normally on 3 eth0 192.0.2.16 UDP 123
18 May 13:29:43 ntpd[1224]: Listen normally on 4 eth0:aka00 192.168.101.2 UDP 
123
18 May 13:29:43 ntpd[1224]: Listen normally on 5 eth0 fe80::205:51ff:fe0a:ef05 
UDP 123
18 May 13:29:43 ntpd[1224]: Listen normally on 6 lo ::1 UDP 123
18 May 13:29:43 ntpd[1224]: peers refreshed
18 May 13:29:43 ntpd[1224]: Listening on routing socket on fd #23 for interface 
updates
18 May 13:29:43 ntpd[1224]: 0.0.0.0 c016 06 restart
18 May 13:29:43 ntpd[1224]: 0.0.0.0 c012 02 freq_set kernel 0.000 PPM
18 May 13:29:43 ntpd[1224]: 0.0.0.0 c011 01 freq_not_set
18 May 13:29:44 ntpd[1224]: 0.0.0.0 c514 04 freq_mode

Any advice would be helpful.
Sidenote: As per my understanding I could safely remove the LCL entries and the 
server line where it lists own IPv4 address of the ARM box. I know that under 
normal circumstances I should provide at least three server addresses. But this 
is not the case here as I just want to sync the box to one device 
(currentlywindows box) non the local LAN, that itself is synced to the outside 
world via internet or GPS or DCF or the like.

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