Hello, I am having an issue with R CMD check with the nightly build of RC 2.3.0 (listed in the subject.)
The problem is this warning: * checking if this is a source package ... WARNING Subdirectory 'src' contains: README _Makefile These are unlikely file names for src files. In fact, they are not source files, but I do not see any reason why they cannot be there, or why I need to be warned of their presence. Potentially I could be informed of their presence, but that is another matter. Now, I only get this warning when I do: R CMD build affxparser R CMD check -l ~/R-packages/ affxparser_1.3.3.tar.gz If I do: R CMD check -l ~/R-packages affxparser I do not get the warning. Is this inconsistent, or is there rationale behind this? I think the warning is inappropriate, or at the least a little restrictive. It seems as if I should be able to put whatever I want in there, especially the _Makefile as I like to build test programs directly and I want to be able to build exactly what I check out from my source code repository without having to copy files in and out. The output from R CMD check is below. Any insight would be appreciated. As always thanks for your patience. jim **************************************************************** **************** Directly on directory ************************* **************************************************************** [EMAIL PROTECTED]:~/projects/bioc$ R CMD check -l ~/R-packages affxparser * checking for working latex ... OK * using log directory '/home/bullard/projects/bioc/affxparser.Rcheck' * using Version 2.3.0 RC (2006-04-19 r37860) * checking for file 'affxparser/DESCRIPTION' ... OK * this is package 'affxparser' version '1.3.3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'affxparser' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating affxparser-Ex.R ... OK * checking examples ... OK * creating affxparser-manual.tex ... OK * checking affxparser-manual.tex ... OK **************************************************************** *************** On the R CMD build version ********************* **************************************************************** [EMAIL PROTECTED]:~/projects/bioc$ R CMD check -l ~/R-packages/ affxparser_1.3.3.tar.gz * checking for working latex ... OK * using log directory '/home/bullard/projects/bioc/affxparser.Rcheck' * using Version 2.3.0 RC (2006-04-19 r37860) * checking for file 'affxparser/DESCRIPTION' ... OK * this is package 'affxparser' version '1.3.3' * checking package dependencies ... OK * checking if this is a source package ... WARNING Subdirectory 'src' contains: README _Makefile These are unlikely file names for src files. * checking whether package 'affxparser' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating affxparser-Ex.R ... OK * checking examples ... OK * creating affxparser-manual.tex ... OK * checking affxparser-manual.tex ... OK WARNING: There was 1 warning, see /home/bullard/projects/bioc/affxparser.Rcheck/00check.log for details ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
