Dear R-developers: Anybody having installed R-patched_2006-07-13 on i386-pc-solaris2.10 with Sun Studio 11, I need you help/advice please.
Thank you very much Latchezar Dimitrov > -----Original Message----- > From: Latchezar Dimitrov > Sent: Wednesday, July 26, 2006 4:48 PM > To: 'Prof Brian Ripley' > Cc: r-devel@stat.math.ethz.ch > Subject: RE: [Rd] Install R-patched_2006-07-13 on > i386-pc-solaris2.10 with Sun Studio 11 > > Dear Prof. Ripley and R-developers: > > Thank you very much for the reply. Please see bellow > > > -----Original Message----- > > From: Prof Brian Ripley [mailto:[EMAIL PROTECTED] > > Sent: Wednesday, July 26, 2006 2:37 AM > > To: Latchezar Dimitrov > > Cc: r-devel@stat.math.ethz.ch > > Subject: Re: [Rd] Install R-patched_2006-07-13 on > i386-pc-solaris2.10 > > with Sun Studio 11 > > > > On Wed, 26 Jul 2006, Latchezar Dimitrov wrote: > > > > > Dear R-developers: > > > > > > I'm trying to build a 64-bit R-patched_2006-07-24 on > > SunFire V40z with > > > on Solaris OS 10 64-bit kernel and using Sun Studio 11 compilers. > > > Everything runs OK until it gets to building package > tools (all.R) > > > where it fails. Bellow is how I tried it (I can provide any other > > > additional info if needed). Any help please? > > > > You seem to have gcc 4.1.1 in your paths, so can you try > that instead. > > True (that's why I gave the env) however that is c/c++ only. > I cannot build gcc fortran right way and since R is on top of > my list I switched to Sun Studio 11. I included the libraries > and the path in order to use makeinfo and readline which I > compiled with that gcc (I build most essential gnu utils with > it too as well as some applications and everything seems ok). > To avoid misuse of it I explicitly specified all the programs > that I knew could be mistaken (CC,CXX,etc), gnu ld was > renamed. I as sure as one can that there was not any (mis)use > of /usr/local/ except for readline and makeinfo (I believe > the build did not go that far though). One additional thing > that I missed in my prev. e-mail is that R binary was build > seemingly properly, i.e., it starts ok however with > complaints about missing base parts (obviously). > > Now to make it clear it has nothing to do with that gcc I > removed all the paths from the environment and to make sure > nothing leaks through I renamed /usr/local so it stays out of > the way. Then I set --with-readline=no and started clean (as > you may have already noticed I build in a separate from src > dir (obj-R) completely empty at the beginning. It failed the > very same way. > > Further, I decided to give 32-bit build a try. To make things > more interesting I restore /usr/local and the path to > /usr/local/bin in order to be able to use makeinfo (since the > only readline I had was a 64-bit one I gave it up). And > voila, it built like a charm. The only tests that I noticed > failed were those involving tcltk (I had only 64-bit ones installed). > > The only problem still remaining is I cannot care less about > 32-bit version. > > Please find attached the log of 64-bit try and a little bit > of 32 success in the end. > > So would someone please help me find out what is wrong and > build my favorite 64-bit R? > > Thank you very much, > Latchezar Dimitrov > > > > > > This looks like a fairly fundamental problem with your > current build, > > possibly a mis-compile. > > > > > > > > Thank you very much > > > > > > Latchezar Dimitrov > > > Wake Forest Univ. School of Medicine > > > > > > > > > > > > [EMAIL PROTECTED] # echo $PATH > > > > > > /opt/SUNWspro/bin:/usr/sbin:/usr/bin:/usr/openwin/bin:/usr/ccs/bin:/us > > > r/ > > > > > > openwin/bin:/usr/dt/bin:/usr/platform/i86pc/sbin:/opt/SUNWvts/bin:/opt > > > /S > > > UNWexplo/bin:/usr/local/bin > > > [EMAIL PROTECTED] # echo $CC > > > cc > > > [EMAIL PROTECTED] # echo $CXX > > > CC > > > [EMAIL PROTECTED] # echo $CFLAGS > > > -xarch=amd64 -xmodel=medium > > > [EMAIL PROTECTED] # echo $CXXFLAGS > > > -xarch=amd64 -xmodel=medium > > > [EMAIL PROTECTED] # echo $FCFLAGS > > > -xarch=amd64 -xmodel=medium > > > [EMAIL PROTECTED] # echo $FFLAGS > > > -xarch=amd64 -xmodel=medium > > > [EMAIL PROTECTED] # echo $LDFLAGS > > > -xarch=amd64 -xmodel=medium > > > [EMAIL PROTECTED] # echo $R_BROWSER > > > /usr/sfw/bin/mozilla > > > [EMAIL PROTECTED] # echo $r_arch > > > amd64 > > > [EMAIL PROTECTED] # echo $LD_LIBRARY_PATH > > > > > > /usr/openwin/lib:/usr/local/gcc-4.1.1-x86-bootstrap/lib/gcc/i386-pc-so > > > la > > > > > > ris2.10/4.1.1/amd64:/usr/local/lib:/usr/local/gcc-4.1.1-x86-bootstrap/ > > > li > > > > > b/gcc/i386-pc-solaris2.10/4.1.1/amd64:/usr/local/lib:/usr/loca > > l/gcc-4.1. > > > > > > 1-x86-bootstrap/lib/gcc/i386-pc-solaris2.10/4.1.1/amd64:/usr/local/lib > > > [EMAIL PROTECTED] # > > > > > > > > > ../src/R-patched_2006-07-24/configure > > > --prefix=/opt/R-2.3.1-patched_2006-07-24-Sun_Studio_11 > > --with-readline > > > --disable-mbcs R_PAPERSIZE=letter --disable-rpath --with-bzlib > > > --with-zlib --with-spcre --with-tcltk --disable-R-profiling > > > --disable-nls > > > > > > > > > > > > Error in parseNamespaceFile(package, package.lib, mustExist > > = FALSE) : > > > subscript out of bounds > > > Execution halted > > > *** Error code 1 > > > The following command caused the error: > > > (cat > > > > > > ../../../../src/R-patched_2006-07-24/src/library/tools/R/makeLazyLoad. > > > R; > > > \ > > > echo "makeLazyLoading(\"tools\")") | \ > > > R_DEFAULT_PACKAGES=NULL LC_COLLATE=C ../../../bin/R --vanilla > > > --slave > > > > /dev/null > > > dmake: Fatal error: Command failed for target `all' > > > Current working directory /export/data/obj-R/src/library/tools > > > *** Error code 1 > > > The following command caused the error: > > > for pkg in profile base tools utils grDevices graphics > > stats datasets > > > methods grid splines stats4 tcltk; do \ > > > (cd ${pkg} && dmake) || exit 1; \ > > > done > > > dmake: Fatal error: Command failed for target `R' > > > Current working directory /export/data/obj-R/src/library > > > *** Error code 1 > > > The following command caused the error: > > > for d in scripts include extra appl nmath unix main modules > > library; > > > do \ > > > (cd ${d} && dmake R) || exit 1; \ > > > done > > > dmake: Fatal error: Command failed for target `R' > > > Current working directory /export/data/obj-R/src > > > *** Error code 1 > > > The following command caused the error: > > > for d in m4 tools doc etc share src tests; do \ > > > (cd ${d} && dmake R) || exit 1; \ > > > done > > > dmake: Fatal error: Command failed for target `R' > > > [EMAIL PROTECTED] # > > > > > > ______________________________________________ > > > R-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > > > > > > > -- > > Brian D. Ripley, [EMAIL PROTECTED] > > Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ > > University of Oxford, Tel: +44 1865 272861 (self) > > 1 South Parks Road, +44 1865 272866 (PA) > > Oxford OX1 3TG, UK Fax: +44 1865 272595 > > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
