I asked a question that might help me track down what changed between
2.3.1 that did build and the 2.4.0 version that will not build. Some of
the undefined names the linker was complaining about looked like #define
symbols that were not picked up by configure. The first thing I was
hoping for was to find out if this problem looked familiar? Whether or
not, I'm willing to try to work on it, but hope I can get reasonable
answers to honest questions....
Dan
Saw:
IBM employee is unable to make AIX work: so why does he expect us to?
in response to:
From: [EMAIL PROTECTED]
To: [EMAIL PROTECTED]
Subject: Unable to build
Date: Fri, 13 Oct 2006 21:42:37 +0200 (CEST)
Full_Name: Daniel E. Platt
Version: 2.4.0
OS: AIX 5.3
Submission from: (NULL) (129.34.20.23)
Did a new build of gcc c,c++,gfortran v4.1.1, (re)built R 2.3.1 using
config.site as spec'd in R-admin.pdf in sec C.9 as described by Jagat
Sheth,
with addition of FC=gfortran (configure tried using f95, which is present
on the
system, but won't bind with gcc's obj files).
Applying the same to 4.1.1 produces the following:
make[4]: Leaving directory
`/geno4/watplatt/R/R-2.4.0/src/library/tools/src'
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so':
rtld: 0712-001 Symbol TYPEOF was referenced
from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(),
but a
runtime definition
of the symbol was not found.
rtld: 0712-001 Symbol Rf_error was referenced
from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(),
but a
runtime definition
of the symbol was not found.
rtld: 0712-001 Symbol Rf_asLogical was referenced
from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(),
but a
runtime definition
of the symbol was not found.
rtld: 0712-001 Symbol LENGTH was referenced
from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(),
but a
runtime definition
of the symbol was not found.
rtld: 0712-001 Symbol STRING_ELT was referenced
from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(),
bu
Execution halted
make[3]: *** [all] Error 1
make[3]: Leaving directory `/geno4/watplatt/R/R-2.4.0/src/library/tools'
make[2]: *** [R] Error 1
make[2]: Leaving directory `/geno4/watplatt/R/R-2.4.0/src/library'
make[1]: *** [R] Error 1
make[1]: Leaving directory `/geno4/watplatt/R/R-2.4.0/src'
make: *** [R] Error 1
Are there undefined #define's leaking in as code?
Dan
Daniel E. Platt
Bioinformatics and Pattern Discovery
IBM T. J. Watson Research Center
Yorktown Hgts, NY 10598
(914)945-1388
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