On Mon, 9 Jul 2007, Kasper Daniel Hansen wrote: > Hi > > This is a question prompted by the mac version of R, but as I see it, > it should have broader interest. > > These days the CRAN Mac binary per default compiles every package for > two architectures. First i386 and then ppc. In between the two > compilation runs, any object files in pkgname/src is removed. This > cleanup is necessary since otherwise Make would not recompile the > object files under the next architecture. > > I have a package which includes a large SDK which I have put in > src/fusion_sdk > (and subdirectories). I take care of that by using a Makevars file > with essentially (the whole Makevars file is reproduced below) > > PKG_SOURCES = \ > fusion_sdk/calvin_files/data/src/CDFData.cpp > > OBJS=$(PKG_SOURCES:.cpp=.o) > > all: $(SHLIB) > > However, this setup does not remove the object files in the > fusion_sdk subdirectory. From a posting on R-sig-mac by Simon Urbanek > I learned that I need to clean up these directories myself. > > I have - per R extensions - attempted to do so using a pkgname/ > cleanup script. While this works for cleaning up the sub directories > when I do R CMD build, it seems as if this script is not being run > between compilation runs (is this intentional btw.?).
What do you mean by 'compilation runs'? The 'cleanup' script will be run by R CMD INSTALL --cleanup (and without --cleanup it is intentionally not run). > So my question is now: how do I in a simple way clean up my > subdirectories? I would prefer it to be as simple as possible because > so far I have not really needed anything besides a Makevars file. In > fact the impression I have right now from looking at the SHLIB and > INSTALL scripts is that I might need a Makefile that removes the > object files _before_ starting the compilation, as I don't really see > any cleanup process (eg. making a target clean) - but this may very > well be due to my limited understanding of these scripts. I see R CMD INSTALL --clean that runs a clean up afterwards, and 2.6.0 will also have R CMD INSTALL --preclean in case you forgot --clean on the last run. > Any help/hints on how to proceed? Especially if I want it to be > portable? What does R CMD INSTALL --clean not do that you want? If you are talking about R CMD SHLIB, that currently does not clean up but this has been raised and it will most likely have a --clean option in 2.6.0 that removes $(OBJECTS). > > Kasper > > The full Makevars file: > > MYCXXFLAGS=-O0 You do realize that is highly non-portable? > %.o: %.cpp > $(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) $(MYCXXFLAGS) -c $< -o $@ > > PKG_CPPFLAGS=\ > -imacros R_affx_constants.h\ > -Ifusion_sdk/calvin_files/array/src\ > -Ifusion_sdk/calvin_files/data/src\ > -Ifusion_sdk/calvin_files/exception/src\ > -Ifusion_sdk/calvin_files/fusion/src\ > -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter\ > -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter\ > -Ifusion_sdk/calvin_files/parameter/src\ > -Ifusion_sdk/calvin_files/parsers/src\ > -Ifusion_sdk/calvin_files/portability/src\ > -Ifusion_sdk/calvin_files/template/src\ > -Ifusion_sdk/calvin_files/utils/src\ > -Ifusion_sdk/calvin_files/writers/src\ > -Ifusion_sdk/file\ > -Ifusion_sdk/portability\ > -D_USE_MEM_MAPPING_ > > PKG_SOURCES = \ > fusion_sdk/calvin_files/data/src/CDFData.cpp\ > fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp\ > fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp\ > fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp\ > fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp\ > fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp\ > fusion_sdk/calvin_files/data/src/CELData.cpp\ > fusion_sdk/calvin_files/data/src/DataGroup.cpp\ > fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp\ > fusion_sdk/calvin_files/data/src/DataSet.cpp\ > fusion_sdk/calvin_files/data/src/DataSetHeader.cpp\ > fusion_sdk/calvin_files/data/src/FileHeader.cpp\ > fusion_sdk/calvin_files/data/src/GenericData.cpp\ > fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp\ > fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp\ > fusion_sdk/calvin_files/fusion/src/CalvinAdapter/ > CalvinCELDataAdapter.cpp\ > fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp\ > fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp\ > fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp\ > fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp\ > fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp\ > fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp\ > fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp\ > fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp\ > fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp\ > fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp\ > fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp\ > fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp\ > fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp\ > fusion_sdk/calvin_files/parsers/src/FileInput.cpp\ > fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp\ > fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp\ > fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp\ > fusion_sdk/calvin_files/utils/src/DateTime.cpp\ > fusion_sdk/calvin_files/utils/src/FileUtils.cpp\ > fusion_sdk/calvin_files/utils/src/StringUtils.cpp\ > fusion_sdk/calvin_files/utils/src/checksum.cpp\ > fusion_sdk/file/BPMAPFileData.cpp\ > fusion_sdk/file/BPMAPFileWriter.cpp\ > fusion_sdk/file/CDFFileData.cpp\ > fusion_sdk/file/CELFileData.cpp\ > fusion_sdk/file/FileIO.cpp\ > fusion_sdk/file/FileWriter.cpp\ > R_affx_cel_parser.cpp\ > R_affx_cdf_parser.cpp\ > R_affx_cdf_extras.cpp\ > R_affx_bpmap_parser.cpp > > OBJS=$(PKG_SOURCES:.cpp=.o) > > all: $(SHLIB) -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
