>The longer answer is 'yes', since the source of the > function is readily available (typing segment)
Hello, That is exactly why I have posted this question at the development forum - there was no way of specifying output parameters in the "segment" function Thank you Vlad On 2/20/08, Martin Morgan <[EMAIL PROTECTED]> wrote: > This is a Bioconductor package, so please address questions to the > Bioconductor list (instructions at > http://www.bioconductor.org/docs/mailList.html). This is not a > question related to 'development' but to use, so you do not need to > ask on the '-devel' mailing list. > > Do you mean the result of 'segment'? It's always helpful to provide a > reproducible (e.g., using the example data provided with the package) > example! > > I think the easy answer to your question is 'no', there are no > documented arguments influencing how statistics on the segment are > calculated. The longer answer is 'yes', since the source of the > function is readily available (typing > > > segment > > ) and the segment boundaries are returned and hence other statistics > can be calculated by the user. > > Hope that helps, > > Martin > > "Vladmir Makarov" <[EMAIL PROTECTED]> writes: > > > Hello R Developers > > > > I am using DNACopy package > > http://bioconductor.org/packages/1.9/bioc/html/DNAcopy.html > > > > I am not able to figure out how to (if at all possible) to modify > > output format, namely, I am getting the following: > > "ID" "chrom" "loc.start" "loc.end" "num.mark" "seg.mean" > > > > Is it a way to get also median and standard deviation? > > > > Thanks in advance, > > Vlad > > > > -- > > *********************************** > > Dr. Vladimir Makarov > > Instructor, Computer Science Department > > School of Computer Science and Information Systems > > Pace University > > 163 Williams Street > > New York, NY 10038 > > Phone: (212) 639 - 7422 > > eMail: [EMAIL PROTECTED] > > http://matrix.csis.pace.edu/~vmakarov/ > > > > *********************************** > > > > #################################################################### > > The information contained in this email message and any files > > transmitted with it are confidential and intended solely for the use > > by the individual(s) originally addressed. Please disregard and delete > > this email if you are not the intended recipient. > > #################################################################### > > > > ______________________________________________ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- > Martin Morgan > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M2 B169 > Phone: (206) 667-2793 > -- *********************************** Dr. Vladimir Makarov Instructor, Computer Science Department School of Computer Science and Information Systems Pace University 163 Williams Street New York, NY 10038 Phone: (212) 639 - 7422 eMail: [EMAIL PROTECTED] http://matrix.csis.pace.edu/~vmakarov/ *********************************** #################################################################### The information contained in this email message and any files transmitted with it are confidential and intended solely for the use by the individual(s) originally addressed. Please disregard and delete this email if you are not the intended recipient. #################################################################### ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
