What compiler is this? This is a compiler issue, not an R one.
My guess is that you are mixing gcc (which has __builtin_isnan) and cc
(which does not).
On Fri, 5 Sep 2008, Paulo Nuin wrote:
Hi everyone
This is my first post to the list. I had experience installing and using
Bioconductor on Linux and Windows systems but I am encountering problems
installing Biobase on Solaris running on Sparc. The package compilation works
fine, with only a warning
warning: implicit declaration of function `__builtin_isnan'
the help files are generated but in the end it fails with an error also
related __builtin_isnan
** building package indices ...
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/usr/local/lib/R/library/Biobase/libs/Biobase.so':
ld.so.1: R: fatal: relocation error: file
/usr/local/lib/R/library/Biobase/libs/Biobase.so: symbol __builtin_isnan:
referenced symbol not found
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
ERROR: installing package indices failed
The machine I am using is a Sun SPARC Victoria Falls SunOS 5.10
Generic_127111-11 sun4v sparc SUNW,T5140
I posted this message to the BioC list and it was suggested that I tried
installing any R package that needed compilation. I installed the XML package
with no problems. Any help is appreciated. Thanks in advance
Paulo
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