This is a shot in the dark, but I noticed your PATH contains spaces in the paths to HTML Help and MiKTeX. The R Install & Admin manual explicitly says not to paths with spaces. If anything, it won't hurt to make this correction.
HTH, Josh -- http://quantemplation.blogspot.com On Tue, Dec 9, 2008 at 11:32 AM, Andy Bunn <[EMAIL PROTECTED]> wrote: >> -----Original Message----- >> From: Uwe Ligges [mailto:[EMAIL PROTECTED] >> Sent: Tuesday, December 09, 2008 2:03 AM >> To: Andy Bunn >> Cc: r-devel@r-project.org >> Subject: Re: [Rd] R CMD check not running examples under Windows >> >> My suggestion is to submit the package to the win-builder service and >> look whether that one checks your example, then you know if it is the >> package or your setup that causes the problem. > > Uwe, thanks for the tip but the issue is definitely my system - not the > package. I've built a skeleton using package.skeleton() and the same > phenomenon occurs. Same with checking CRAN packages from source. If it is a > problem with my system - how do I go about trouble shooting? > > > >> >> Best, >> Uwe Ligges >> >> >> Andy Bunn wrote: >> > All, >> > >> > >> > I have a fresh build of R 2.8.0 from source on Windows XP using the >> latest Rtools binary (Rtools29.exe). All appears to be well with the >> install and make check-all exits cleanly. However, when running R CMD >> check mypkg the program jumps from checking for non-ASCII to checking >> the PDF version of the manual: >> > >> > * checking data for non-ASCII characters ... OK >> > * checking PDF version of manual ... OK >> > >> > It skips the making the R-ex subdir and checking the examples. Here >> is the complete log: >> > >> > >> > * using log directory 'C:/Data/research/dplR_dev/dplR.Rcheck' >> > * using R version 2.8.0 (2008-10-20) >> > * using session charset: ISO8859-1 >> > * checking for file 'dplR/DESCRIPTION' ... OK >> > * checking extension type ... Package >> > * this is package 'dplR' version '1.1.5' >> > * checking package name space information ... OK >> > * checking package dependencies ... OK >> > * checking if this is a source package ... OK >> > * checking for .dll and .exe files ... OK >> > * checking whether package 'dplR' can be installed ... OK >> > * checking package directory ... OK >> > * checking for portable file names ... OK >> > * checking DESCRIPTION meta-information ... OK >> > * checking top-level files ... OK >> > * checking index information ... OK >> > * checking package subdirectories ... OK >> > * checking R files for non-ASCII characters ... OK >> > * checking R files for syntax errors ... OK >> > * checking whether the package can be loaded ... OK >> > * checking whether the package can be loaded with stated dependencies >> ... OK >> > * checking whether the name space can be loaded with stated >> dependencies ... OK >> > * checking for unstated dependencies in R code ... OK >> > * checking S3 generic/method consistency ... OK >> > * checking replacement functions ... OK >> > * checking foreign function calls ... OK >> > * checking R code for possible problems ... OK >> > * checking Rd files ... OK >> > * checking Rd cross-references ... OK >> > * checking for missing documentation entries ... OK >> > * checking for code/documentation mismatches ... OK >> > * checking Rd \usage sections ... OK >> > * checking data for non-ASCII characters ... OK >> > * checking PDF version of manual ... OK >> > >> > I am running this with no flags yet it seems like I'm outside this >> line in the check script: >> > if($opt_examples && (-d &file_path($library, $pkgname, "R-ex"))) { >> > >> > Here is the version: >> >> version >> > _ >> > platform i386-pc-mingw32 >> > arch i386 >> > os mingw32 >> > system i386, mingw32 >> > status >> > major 2 >> > minor 8.0 >> > year 2008 >> > month 10 >> > day 20 >> > svn rev 46754 >> > language R >> > version.string R version 2.8.0 (2008-10-20) >> > >> > >> > And the PATH: >> > C:\Data\research\dplR_dev>PATH >> > PATH=c:\Rtools\bin;c:\Rtools\perl\bin;c:\Rtools\MinGW\bin;C:\R\R- >> 2.8.0\bin\;C:\P >> > rogram Files\HTML Help Workshop\;C:\Program Files\MiKTeX >> 2.6\miktex\bin;C:\cygwi >> > >> n\bin;C:\FWTools2.2.6\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\Sys >> tem32\Wbe >> > m;C:\WINDOWS\system32\nls;C:\WINDOWS\system32\nls\ENGLISH;C:\Program >> Files\Novel >> > l\ZENworks\;C:\Program >> Files\QuickTime\QTSystem;C:\ArcGIS\arcexe9x\bin;C:\Progra >> > m Files\Common Files\GTK\2.0\bin;C:\Program Files\GPS Pathfinder >> Office 3.10;C:\ >> > dpl;C:\Program Files\QuickTime\QTSystem\;C:\Program Files\SSH >> Communications Sec >> > urity\SSH Secure Shell;Z:.; >> > >> > I expect some cygwin or perl issue but I'm not sure how to proceed in >> tracking this down. Cygwin is a fresh install as well. Any suggestions >> on what to do next greatly appreciated. >> > >> > -A >> > >> > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> > Andy Bunn >> > Environmental Sciences, Huxley College >> > Western Washington University >> > Bellingham, WA 98225-9181 >> > Skype: andy.bunn >> > Phone: 360-650-4252 >> > Fax: 360-650-7284 >> > http://myweb.facstaff.wwu.edu/bunna/ >> > >> > ______________________________________________ >> > R-devel@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/r-devel > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
