This was rather a large shift of subject, so I've pruned the
recipients list.
Is lazy loading involved? If so I have an idea that may or may not be
relevant. We do cache in memory the lazy-loading database for speed
on slow (network-mounted or USB drive) file systems. Now the cache is
flushed at least if you do detach(foo, unload = TRUE) or but I can
envisage a set of circumstances in which it might not be.
So perhaps try detach(foo, unload = TRUE) or not using lazy-loading
when developing the package?
On Fri, 20 Feb 2009, Berwin A Turlach wrote:
G'day all,
On Fri, 20 Feb 2009 04:01:07 +0000 (GMT)
Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote:
library.dynam.unload() does work if the OS is cooperative. And if
you have your package set up correctly and unload the namespace (and
not just detach the package if there is a namespace) then the shared
object/DLL will be unloaded. [...]
I guess I have a similar code-install-test development cycle as Alex;
and I seem to work on a cooperative OS (Kubuntu 8.04).
My set up is that I install packages on which I work into a separate
library. To test changes to such packages, I start R in a directory
which contains a .Rprofile file which, via .libPaths(), adds the above
library to the library path. In this R session I then test the changes.
I also used to quit and restart R whenever I re-installed a package with
namespace to test the changes made. Somehow I got the impression that
this was the way to proceed when namespaces were introduced; and I did
not realise until recently that better ways (unloading the namespace)
exist.
However, I noticed the following behaviour under R 2.8.1 and "R version
2.9.0 Under development (unstable) (2009-02-19 r47958)" which I found
surprising:
1) In the running R session, issue the command "unloadNamespace(XXX)"
2) Do changes to the code of the package; e.g. add a "print("hello
world")" statement to one of the R functions.
3) Install the new package
4) In the running R session, issue the command "library(XXX)" and call
the R function that was changed.
Result: "Hello world" is not printed, somehow the old R function is
still used. If I issue the commands "unloadNamespace(XXX)" and
"library(XXX)" once more then a call to the R function that was changed
will print "Hello world"; i.e. the new code is used.
If the above sequence is changed to 2), 3) and then 1), then 4) behaves
"as expected" and the new R code is used immediately.
As far as I can tell, if via the .onUnload() hook the shared object is
unloaded via library.dynam.unload(), changes in the C code take effect
no matter whether I perform the above steps in the sequence 1-2-3-4 or
2-3-1-4.
My preference is to use the sequence 1-2-3-4 since it seems to be the
"more logical and cleaner" sequence; and I have vague memories that I
managed to crash R in the past after using 2-3 and then trying to quit
R.
I am wondering why does it make a difference with respect to R code in
which order these steps are done but not with respect to compiled
code. Well, I guess I understand why the order does not matter for
compiled code, but I do not understand why the order matters for R
code. I could not find anything in the documentation that would
explain this behaviour, or indicate that this is the intended
behaviour.
Enlightening comments and/or pointers to where this behaviour is
documented would be welcome.
Cheers,
Berwin
=========================== Full address =============================
Berwin A Turlach Tel.: +65 6516 4416 (secr)
Dept of Statistics and Applied Probability +65 6516 6650 (self)
Faculty of Science FAX : +65 6872 3919
National University of Singapore
6 Science Drive 2, Blk S16, Level 7 e-mail: sta...@nus.edu.sg
Singapore 117546 http://www.stat.nus.edu.sg/~statba
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
______________________________________________
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
