Hello:
Encountered a problem installing R on
CentOS release 5.2
This is a 64bit OS
I need to know if this will work on this server or do I need to change OS>
Thanks
Bob
I downloaded the source ( R-2.8.1.tar.gz ) due to no release being available
for CentOS.
My ./configure --with-x=no --with-readline=no R_PAPERSIZE='letter'
Failed:
./configure --with-x=no --with-readline=no R_PAPERSIZE='letter'
195 lines deleted from log
configure:5105: checking whether we are using the GNU C compiler
configure:5134: gcc -c -I/usr/local/include conftest.c >&5
configure:5140: $? = 0
configure:5157: result: yes
configure:5162: checking whether gcc accepts -g
configure:5192: gcc -c -g -I/usr/local/include conftest.c >&5
configure:5198: $? = 0
configure:5297: result: yes
configure:5314: checking for gcc option to accept ISO C89
configure:5388: gcc -c -g -O2 -I/usr/local/include conftest.c >&5
configure:5394: $? = 0
configure:5417: result: none needed
configure:5442: checking how to run the C preprocessor
configure:5482: gcc -E -I/usr/local/include conftest.c
configure:5488: $? = 0
configure:5519: gcc -E -I/usr/local/include conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:5525: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5558: result: gcc -E
configure:5587: gcc -E -I/usr/local/include conftest.c
configure:5593: $? = 0
configure:5624: gcc -E -I/usr/local/include conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:5630: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5669: checking whether gcc needs -traditional
configure:5711: result: no
configure:5723: checking how to run the C preprocessor
configure:5839: result: gcc -E
configure:5868: gcc -E -I/usr/local/include conftest.c
configure:5874: $? = 0
configure:5905: gcc -E -I/usr/local/include conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:5911: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
FULL LOG FILE FOLLOWS
./configure --with-x=no --with-readline=no R_PAPERSIZE=letter
## --------- ##
## Platform. ##
## --------- ##
hostname = ip-216-55-136-29.dedicated.abac.net
uname -m = x86_64
uname -r = 2.6.18-92.el5
uname -s = Linux
uname -v = #1 SMP Tue Jun 10 18:51:06 EDT 2008
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/kerberos/sbin
PATH: /usr/kerberos/bin
PATH: //sbin
PATH: //bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /sbin
PATH: /bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /root/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2376: checking build system type
configure:2394: result: x86_64-unknown-linux-gnu
configure:2416: checking host system type
configure:2431: result: x86_64-unknown-linux-gnu
configure:3062: checking for pwd
configure:3080: found //bin/pwd
configure:3093: result: //bin/pwd
configure:3101: checking whether builddir is srcdir
configure:3109: result: yes
configure:3114: checking for working aclocal
configure:3122: result: missing
configure:3127: checking for working autoconf
configure:3135: result: missing
configure:3140: checking for working automake
configure:3148: result: missing
configure:3153: checking for working autoheader
configure:3161: result: missing
configure:3170: checking for gawk
configure:3186: found //bin/gawk
configure:3197: result: gawk
configure:3208: checking for grep that handles long lines and -e
configure:3282: result: //bin/grep
configure:3287: checking for egrep
configure:3365: result: //bin/grep -E
configure:3370: checking whether ln -s works
configure:3374: result: yes
configure:3386: checking for bison
configure:3416: result: no
configure:3386: checking for byacc
configure:3416: result: no
configure:3429: checking for ar
configure:3445: found /usr/bin/ar
configure:3456: result: ar
configure:3483: checking for a BSD-compatible install
configure:3539: result: /usr/bin/install -c
configure:3574: checking for sed
configure:3593: found //bin/sed
configure:3605: result: //bin/sed
configure:3625: checking for less
configure:3643: found /usr/bin/less
configure:3655: result: /usr/bin/less
configure:3678: checking for perl
configure:3696: found /usr/bin/perl
configure:3708: result: /usr/bin/perl
configure:3720: checking whether perl version is at least 5.8.0
configure:3731: result: yes
configure:3750: checking for dvips
configure:3783: result: no
configure:3796: checking for tex
configure:3829: result: no
configure:3842: checking for latex
configure:3875: result: no
configure:3890: WARNING: you cannot build DVI versions of the R manuals
configure:3897: checking for makeindex
configure:3930: result: no
configure:3943: checking for pdftex
configure:3976: result: no
configure:3989: checking for pdflatex
configure:4022: result: no
configure:4037: WARNING: you cannot build PDF versions of the R manuals
configure:4044: checking for makeinfo
configure:4077: result: no
configure:4112: WARNING: you cannot build info or HTML versions of the R
manuals
configure:4123: checking for texi2dvi
configure:4156: result: no
configure:4227: checking for unzip
configure:4245: found /usr/bin/unzip
configure:4257: result: /usr/bin/unzip
configure:4273: checking for zip
configure:4291: found /usr/bin/zip
configure:4303: result: /usr/bin/zip
configure:4319: checking for gzip
configure:4337: found //bin/gzip
configure:4349: result: //bin/gzip
configure:4367: checking for firefox
configure:4400: result: no
configure:4367: checking for mozilla
configure:4400: result: no
configure:4367: checking for galeon
configure:4400: result: no
configure:4367: checking for opera
configure:4400: result: no
configure:4367: checking for xdg-open
configure:4400: result: no
configure:4367: checking for kfmclient
configure:4400: result: no
configure:4367: checking for gnome-moz-remote
configure:4400: result: no
configure:4367: checking for open
configure:4385: found /usr/bin/open
configure:4397: result: /usr/bin/open
configure:4414: result: using default browser ... /usr/bin/open
configure:4424: checking for acroread
configure:4457: result: no
configure:4424: checking for acroread4
configure:4457: result: no
configure:4424: checking for evince
configure:4457: result: no
configure:4424: checking for xpdf
configure:4457: result: no
configure:4424: checking for gv
configure:4457: result: no
configure:4424: checking for gnome-gv
configure:4457: result: no
configure:4424: checking for ggv
configure:4457: result: no
configure:4424: checking for kghostview
configure:4457: result: no
configure:4424: checking for open
configure:4442: found /usr/bin/open
configure:4454: result: /usr/bin/open
configure:4476: checking for pkg-config
configure:4495: found /usr/bin/pkg-config
configure:4507: result: /usr/bin/pkg-config
configure:4564: checking for gcc
configure:4580: found /usr/bin/gcc
configure:4591: result: gcc
configure:4829: checking for C compiler version
configure:4836: gcc --version >&5
gcc (GCC) 4.1.2 20071124 (Red Hat 4.1.2-42)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:4839: $? = 0
configure:4846: gcc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix --enabl
e-checking=release --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-libgcj-multifile
--enable-languages=c,c+
+,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi
--enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jr
e --with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20071124 (Red Hat 4.1.2-42)
configure:4849: $? = 0
configure:4856: gcc -V >&5
gcc: '-V' option must have argument
configure:4859: $? = 1
configure:4882: checking for C compiler default output file name
configure:4909: gcc -I/usr/local/include -L/usr/local/lib64 conftest.c >&5
configure:4912: $? = 0
configure:4950: result: a.out
configure:4967: checking whether the C compiler works
configure:4977: ./a.out
configure:4980: $? = 0
configure:4997: result: yes
configure:5004: checking whether we are cross compiling
configure:5006: result: no
configure:5009: checking for suffix of executables
configure:5016: gcc -o conftest -I/usr/local/include -L/usr/local/lib64
conftest.c >&5
configure:5019: $? = 0
configure:5043: result:
configure:5049: checking for suffix of object files
configure:5075: gcc -c -I/usr/local/include conftest.c >&5
configure:5078: $? = 0
configure:5101: result: o
configure:5105: checking whether we are using the GNU C compiler
configure:5134: gcc -c -I/usr/local/include conftest.c >&5
configure:5140: $? = 0
configure:5157: result: yes
configure:5162: checking whether gcc accepts -g
configure:5192: gcc -c -g -I/usr/local/include conftest.c >&5
configure:5198: $? = 0
configure:5297: result: yes
configure:5314: checking for gcc option to accept ISO C89
configure:5388: gcc -c -g -O2 -I/usr/local/include conftest.c >&5
configure:5394: $? = 0
configure:5417: result: none needed
configure:5442: checking how to run the C preprocessor
configure:5482: gcc -E -I/usr/local/include conftest.c
configure:5488: $? = 0
configure:5519: gcc -E -I/usr/local/include conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:5525: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5558: result: gcc -E
configure:5587: gcc -E -I/usr/local/include conftest.c
configure:5593: $? = 0
configure:5624: gcc -E -I/usr/local/include conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:5630: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:5669: checking whether gcc needs -traditional
configure:5711: result: no
configure:5723: checking how to run the C preprocessor
configure:5839: result: gcc -E
configure:5868: gcc -E -I/usr/local/include conftest.c
configure:5874: $? = 0
configure:5905: gcc -E -I/usr/local/include conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:5911: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:6018: checking for gfortran
configure:6034: found /usr/bin/gfortran
configure:6045: result: gfortran
configure:6170: checking for Fortran 77 compiler version
configure:6177: gfortran --version >&5
GNU Fortran (GCC) 4.1.2 20071124 (Red Hat 4.1.2-42)
Copyright (C) 2007 Free Software Foundation, Inc.
GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING
configure:6180: $? = 0
configure:6187: gfortran -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix --enabl
e-checking=release --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-libgcj-multifile
--enable-languages=c,c+
+,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi
--enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jr
e --with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20071124 (Red Hat 4.1.2-42)
configure:6190: $? = 0
configure:6197: gfortran -V >&5
gfortran: '-V' option must have argument
configure:6200: $? = 1
configure:6208: checking whether we are using the GNU Fortran 77 compiler
configure:6227: gfortran -c conftest.F >&5
configure:6233: $? = 0
configure:6250: result: yes
configure:6256: checking whether gfortran accepts -g
configure:6273: gfortran -c -g conftest.f >&5
configure:6279: $? = 0
configure:6295: result: yes
configure:6384: checking for g++
configure:6414: result: no
configure:6384: checking for c++
configure:6414: result: no
configure:6384: checking for gpp
configure:6414: result: no
configure:6384: checking for aCC
configure:6414: result: no
configure:6384: checking for CC
configure:6414: result: no
configure:6384: checking for cxx
configure:6414: result: no
configure:6384: checking for cc++
configure:6414: result: no
configure:6384: checking for cl.exe
configure:6414: result: no
configure:6384: checking for FCC
configure:6414: result: no
configure:6384: checking for KCC
configure:6414: result: no
configure:6384: checking for RCC
configure:6414: result: no
configure:6384: checking for xlC_r
configure:6414: result: no
configure:6384: checking for xlC
configure:6414: result: no
configure:6442: checking for C++ compiler version
configure:6449: g++ --version >&5
./configure: line 6450: g++: command not found
configure:6452: $? = 127
configure:6459: g++ -v >&5
./configure: line 6460: g++: command not found
configure:6462: $? = 127
configure:6469: g++ -V >&5
./configure: line 6470: g++: command not found
configure:6472: $? = 127
configure:6475: checking whether we are using the GNU C++ compiler
configure:6504: g++ -c -I/usr/local/include conftest.cpp >&5
./configure: line 6505: g++: command not found
configure:6510: $? = 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
|
| int
| main ()
| {
| #ifndef __GNUC__
| choke me
| #endif
|
| ;
| return 0;
| }
configure:6527: result: no
configure:6532: checking whether g++ accepts -g
configure:6562: g++ -c -g -I/usr/local/include conftest.cpp >&5
./configure: line 6563: g++: command not found
configure:6568: $? = 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:6600: g++ -c -I/usr/local/include conftest.cpp >&5
./configure: line 6601: g++: command not found
configure:6606: $? = 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:6639: g++ -c -g -I/usr/local/include conftest.cpp >&5
./configure: line 6640: g++: command not found
configure:6645: $? = 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:6667: result: no
configure:6695: checking how to run the C++ preprocessor
configure:6731: g++ -E -I/usr/local/include conftest.cpp
./configure: line 6732: g++: command not found
configure:6737: $? = 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| Syntax error
configure:6731: g++ -E -I/usr/local/include conftest.cpp
./configure: line 6732: g++: command not found
configure:6737: $? = 127
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| Syntax error
configure:6731: /lib/cpp -I/usr/local/include conftest.cpp
cpp: error trying to exec 'cc1plus': execvp: No such file or directory
configure:6737: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| Syntax error
configure:6731: /lib/cpp -I/usr/local/include conftest.cpp
cpp: error trying to exec 'cc1plus': execvp: No such file or directory
configure:6737: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| Syntax error
configure:6807: result: /lib/cpp
configure:6836: /lib/cpp -I/usr/local/include conftest.cpp
cpp: error trying to exec 'cc1plus': execvp: No such file or directory
configure:6842: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| Syntax error
configure:6836: /lib/cpp -I/usr/local/include conftest.cpp
cpp: error trying to exec 'cc1plus': execvp: No such file or directory
configure:6842: $? = 1
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "R"
| #define PACKAGE_TARNAME "R"
| #define PACKAGE_VERSION "2.8.1"
| #define PACKAGE_STRING "R 2.8.1"
| #define PACKAGE_BUGREPORT "r-b...@r-project.org"
| #define PACKAGE "R"
| #define VERSION "2.8.1"
| #define R_PLATFORM "x86_64-unknown-linux-gnu"
| #define R_CPU "x86_64"
| #define R_VENDOR "unknown"
| #define R_OS "linux-gnu"
| #define Unix 1
| #define R_ARCH ""
| /* end confdefs.h. */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| Syntax error
configure:6904: error: C++ preprocessor "/lib/cpp" fails sanity check
See `config.log' for more details.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=no
ac_cv_env_BLAS_LIBS_set=
ac_cv_env_BLAS_LIBS_value=
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPICFLAGS_set=
ac_cv_env_CPICFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXXPICFLAGS_set=
ac_cv_env_CXXPICFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_DEFS_set=
ac_cv_env_DEFS_value=
ac_cv_env_DYLIB_LDFLAGS_set=
ac_cv_env_DYLIB_LDFLAGS_value=
ac_cv_env_DYLIB_LD_set=
ac_cv_env_DYLIB_LD_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FCPICFLAGS_set=
ac_cv_env_FCPICFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_FPICFLAGS_set=
ac_cv_env_FPICFLAGS_value=
ac_cv_env_JAVA_HOME_set=
ac_cv_env_JAVA_HOME_value=
ac_cv_env_LAPACK_LIBS_set=
ac_cv_env_LAPACK_LIBS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LIBnn_set=
ac_cv_env_LIBnn_value=
ac_cv_env_MAIN_CFLAGS_set=
ac_cv_env_MAIN_CFLAGS_value=
ac_cv_env_MAIN_FFLAGS_set=
ac_cv_env_MAIN_FFLAGS_value=
ac_cv_env_MAIN_LDFLAGS_set=
ac_cv_env_MAIN_LDFLAGS_value=
ac_cv_env_MAIN_LD_set=
ac_cv_env_MAIN_LD_value=
ac_cv_env_MAKE_set=
ac_cv_env_MAKE_value=
ac_cv_env_OBJCFLAGS_set=
ac_cv_env_OBJCFLAGS_value=
ac_cv_env_OBJC_set=
ac_cv_env_OBJC_value=
ac_cv_env_R_BATCHSAVE_set=
ac_cv_env_R_BATCHSAVE_value=
ac_cv_env_R_BROWSER_set=
ac_cv_env_R_BROWSER_value=
ac_cv_env_R_PAPERSIZE_set=set
ac_cv_env_R_PAPERSIZE_value=letter
ac_cv_env_R_PRINTCMD_set=
ac_cv_env_R_PRINTCMD_value=
ac_cv_env_SAFE_FFLAGS_set=
ac_cv_env_SAFE_FFLAGS_value=
ac_cv_env_SHLIB_CFLAGS_set=
ac_cv_env_SHLIB_CFLAGS_value=
ac_cv_env_SHLIB_CXXLDFLAGS_set=
ac_cv_env_SHLIB_CXXLDFLAGS_value=
ac_cv_env_SHLIB_CXXLD_set=
ac_cv_env_SHLIB_CXXLD_value=
ac_cv_env_SHLIB_FCD_set=
ac_cv_env_SHLIB_FCD_value=
ac_cv_env_SHLIB_FCLDFLAGS_set=
ac_cv_env_SHLIB_FCLDFLAGS_value=
ac_cv_env_SHLIB_FFLAGS_set=
ac_cv_env_SHLIB_FFLAGS_value=
ac_cv_env_SHLIB_LDFLAGS_set=
ac_cv_env_SHLIB_LDFLAGS_value=
ac_cv_env_SHLIB_LD_set=
ac_cv_env_SHLIB_LD_value=
ac_cv_env_TCLTK_CPPFLAGS_set=
ac_cv_env_TCLTK_CPPFLAGS_value=
ac_cv_env_TCLTK_LIBS_set=
ac_cv_env_TCLTK_LIBS_value=
ac_cv_env_XMKMF_set=
ac_cv_env_XMKMF_value=
ac_cv_env_YACC_set=
ac_cv_env_YACC_value=
ac_cv_env_YFLAGS_set=
ac_cv_env_YFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_r_arch_set=
ac_cv_env_r_arch_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='//bin/grep -E'
ac_cv_path_GETWD=//bin/pwd
ac_cv_path_GREP=//bin/grep
ac_cv_path_PAGER=/usr/bin/less
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_PKGCONF=/usr/bin/pkg-config
ac_cv_path_R_BROWSER=/usr/bin/open
ac_cv_path_R_GZIPCMD=//bin/gzip
ac_cv_path_R_PDFVIEWER=/usr/bin/open
ac_cv_path_R_UNZIPCMD=/usr/bin/unzip
ac_cv_path_R_ZIPCMD=/usr/bin/zip
ac_cv_path_SED=//bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP=/lib/cpp
ac_cv_prog_F77=gfortran
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=no
ac_cv_prog_f77_g=yes
ac_cv_prog_gcc_traditional=no
r_cv_prog_perl_v5=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='$(SHELL) $(top_srcdir)/tools/missing aclocal'
ALLOCA=''
AR='ar'
ARFLAGS='rc'
AUTOCONF='$(SHELL) $(top_srcdir)/tools/missing autoconf'
AUTOHEADER='$(SHELL) $(top_srcdir)/tools/missing autoheader'
AUTOMAKE='$(SHELL) $(top_srcdir)/tools/missing automake'
AWK='gawk'
BITMAP_LIBS=''
BLAS_LIBS0=''
BLAS_LIBS=''
BLAS_SHLIB_FALSE=''
BLAS_SHLIB_TRUE=''
BUILDDIR_IS_SRCDIR='yes'
BUILD_AQUA_FALSE=''
BUILD_AQUA_TRUE=''
BUILD_BZLIB_FALSE=''
BUILD_BZLIB_TRUE=''
BUILD_CC=''
BUILD_CYGWIN_FALSE=''
BUILD_CYGWIN_TRUE=''
BUILD_INCLUDED_LIBINTL=''
BUILD_JAVA14_FALSE=''
BUILD_JAVA14_TRUE=''
BUILD_LIBINTL_FALSE=''
BUILD_LIBINTL_TRUE=''
BUILD_PCRE_FALSE=''
BUILD_PCRE_TRUE=''
BUILD_R=''
BUILD_XDR_FALSE=''
BUILD_XDR_TRUE=''
BUILD_ZLIB_FALSE=''
BUILD_ZLIB_TRUE=''
CAIRO_CPPFLAGS=''
CAIRO_LIBS=''
CATOBJEXT=''
CC='gcc'
CFLAGS='-g -O2'
CFLAG_VISIBILITY=''
COMPILE_FORTRAN_DOUBLE_COMPLEX_FALSE=''
COMPILE_FORTRAN_DOUBLE_COMPLEX_TRUE=''
CPICFLAGS=''
CPP='gcc -E'
CPPFLAGS='-I/usr/local/include'
CROSS_COMPILING_FALSE=''
CROSS_COMPILING_TRUE=''
CXX='g++'
CXXCPP='/lib/cpp'
CXXFLAGS=''
CXXPICFLAGS=''
C_VISIBILITY=''
DATADIRNAME=''
DEFS=''
DSYMUTIL=''
DUMPBIN=''
DVIPS='false'
DYLIB_EXT=''
DYLIB_LD=''
DYLIB_LDFLAGS=''
DYLIB_UNDEFINED_ALLOWED_FALSE=''
DYLIB_UNDEFINED_ALLOWED_TRUE=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='//bin/grep -E'
EXEEXT=''
F77='gfortran'
F77_VISIBILITY=''
FC=''
FCFLAGS=''
FCFLAGS_f90=''
FCFLAGS_f95=''
FCPICFLAGS=''
FFLAGS='-g -O2'
FGREP=''
FLIBS=''
FOUNDATION_CPPFLAGS=''
FOUNDATION_LIBS=''
FPICFLAGS=''
FW_VERSION=''
GENCAT=''
GETWD='//bin/pwd'
GLIBC21=''
GLIBC2=''
GMSGFMT=''
GMSGFMT_015=''
GREP='//bin/grep'
HAVE_ASPRINTF=''
HAVE_C99_COMPLEX=''
HAVE_FORTRAN_DOUBLE_COMPLEX=''
HAVE_POSIX_PRINTF=''
HAVE_SNPRINTF=''
HAVE_VISIBILITY=''
HAVE_WPRINTF=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_INFO='$(PERL) $(top_srcdir)/tools/install-info.pl'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTOBJEXT=''
INTLBISON=''
INTLLIBS=''
INTLOBJS=''
INTL_LIBTOOL_SUFFIX_PREFIX=''
INTL_MACOSX_LIBS=''
JAR=''
JAVA=''
JAVAC14=''
JAVAC=''
JAVAH=''
JAVA_CPPFLAGS0=''
JAVA_HOME=''
JAVA_LD_LIBRARY_PATH=''
JAVA_LIBS0=''
LAPACK_LDFLAGS=''
LAPACK_LIBS=''
LATEX='false'
LD=''
LDFLAGS='-L/usr/local/lib64'
LIBICONV=''
LIBINTL=''
LIBM=''
LIBMULTITHREAD=''
LIBOBJS=''
LIBPTH=''
LIBR=''
LIBR_LDFLAGS=''
LIBS=''
LIBTHREAD=''
LIBTOOL=''
LIBTOOL_DEPS=''
LIBnn='lib64'
LN_S='ln -s'
LTLIBICONV=''
LTLIBINTL=''
LTLIBMULTITHREAD=''
LTLIBOBJS=''
LTLIBPTH=''
LTLIBTHREAD=''
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAIN_CFLAGS=''
MAIN_FFLAGS=''
MAIN_LD=''
MAIN_LDFLAGS=''
MAJ_MIN_VERSION='2.8'
MAKE='make'
MAKEINDEX='false'
MAKEINFO='false'
MSGFMT=''
MSGFMT_015=''
MSGMERGE=''
NM=''
NMEDIT=''
OBJC=''
OBJCFLAGS=''
OBJCXX=''
OBJCXXFLAGS=''
OBJC_LIBS=''
OBJEXT='o'
OSF_SH_BUG=''
PACKAGE='R'
PACKAGE_BUGREPORT='r-b...@r-project.org'
PACKAGE_NAME='R'
PACKAGE_STRING='R 2.8.1'
PACKAGE_TARNAME='R'
PACKAGE_VERSION='2.8.1'
PAGER='/usr/bin/less'
PAPERCONF=''
PATH_SEPARATOR=':'
PDFLATEX='false'
PDFTEX='false'
PERL='/usr/bin/perl'
PKGCONF='/usr/bin/pkg-config'
POSUB=''
PRI_MACROS_BROKEN=''
RANLIB=''
RBLAS_LDFLAGS=''
READLINE_LIBS=''
RLAPACK_LDFLAGS=''
RMATH_HAVE_EXPM1=''
RMATH_HAVE_LOG1P=''
RMATH_HAVE_WORKING_LOG1P=''
R_ARCH=''
R_BATCHSAVE=''
R_BROWSER='/usr/bin/open'
R_DEFS=''
R_GZIPCMD='//bin/gzip'
R_JAVA_LD_LIBRARY_PATH=''
R_LD_LIBRARY_PATH=''
R_MODULES=''
R_OS='linux-gnu'
R_OSTYPE='unix'
R_PAPERSIZE='letter'
R_PDFVIEWER='/usr/bin/open'
R_PLATFORM='x86_64-unknown-linux-gnu'
R_PRINTCMD=''
R_PROFILING=''
R_RD4DVI='ae'
R_RD4PDF='times,hyper'
R_UNZIPCMD='/usr/bin/unzip'
R_XTRA_CFLAGS=''
R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)'
R_XTRA_CPPFLAGS=''
R_XTRA_CXXFLAGS=''
R_XTRA_FFLAGS=''
R_XTRA_LIBS=''
R_ZIPCMD='/usr/bin/zip'
SAFE_FFLAGS=''
SED='//bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
SHLIB_CFLAGS=''
SHLIB_CXXFLAGS=''
SHLIB_CXXLD=''
SHLIB_CXXLDFLAGS=''
SHLIB_EXT=''
SHLIB_FCD=''
SHLIB_FCLD=''
SHLIB_FCLDFLAGS=''
SHLIB_FFLAGS=''
SHLIB_LD=''
SHLIB_LDFLAGS=''
SHLIB_LIBADD=''
STRIP=''
SUPPORT_MBCS=''
SUPPORT_UTF8=''
TAR='tar'
TCLTK_CPPFLAGS=''
TCLTK_LIBS=''
TCL_CONFIG=''
TEX='false'
TEXI2DVI='false'
TIFF_LIBS=''
TK_CONFIG=''
USE_EXPORTFILES_FALSE=''
USE_EXPORTFILES_TRUE=''
USE_EXTERNAL_BLAS_FALSE=''
USE_EXTERNAL_BLAS_TRUE=''
USE_EXTERNAL_LAPACK_FALSE=''
USE_EXTERNAL_LAPACK_TRUE=''
USE_ICU=''
USE_INCLUDED_LIBINTL=''
USE_MMAP_ZLIB_FALSE=''
USE_MMAP_ZLIB_TRUE=''
USE_NLS=''
USE_NLS_FALSE=''
USE_NLS_TRUE=''
USE_RECOMMENDED_PACKAGES_FALSE=''
USE_RECOMMENDED_PACKAGES_TRUE=''
USE_VECLIB_G95FIX_FALSE=''
USE_VECLIB_G95FIX_TRUE=''
VERSION='2.8.1'
WANT_R_FRAMEWORK_FALSE=''
WANT_R_FRAMEWORK_TRUE='#'
WANT_R_SHLIB_FALSE=''
WANT_R_SHLIB_TRUE='#'
WANT_R_STATIC_FALSE=''
WANT_R_STATIC_TRUE='#'
WOE32DLL=''
XGETTEXT=''
XGETTEXT_015=''
XMKMF=''
XTRA_INTL_CPPFLAGS=''
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=''
X_PRE_LIBS=''
YACC='yacc'
YFLAGS=''
ac_ct_CC='gcc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC=''
ac_ct_OBJC=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
config_opts=' '\''--with-x=no'\'' '\''--with-readline=no'\''
'\''R_PAPERSIZE=letter'\'''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/${LIBnn}'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
lt_ECHO='echo'
mandir='${datarootdir}/man'
mkdir_p=''
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
r_arch=''
rdocdir='${rhome}/doc'
rincludedir='${rhome}/include'
rsharedir='${rhome}/share'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
shlibpath_var=''
striplib=''
stripstaticlib=''
sysconfdir='${prefix}/etc'
target_alias=''
use_aqua=''
use_tcltk=''
## ------------------- ##
## File substitutions. ##
## ------------------- ##
r_cc_lo_rules_frag=''
r_cc_rules_frag=''
r_cxx_rules_frag=''
r_objc_rules_frag=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define PACKAGE_NAME "R"
#define PACKAGE_TARNAME "R"
#define PACKAGE_VERSION "2.8.1"
#define PACKAGE_STRING "R 2.8.1"
#define PACKAGE_BUGREPORT "r-b...@r-project.org"
#define PACKAGE "R"
#define VERSION "2.8.1"
#define R_PLATFORM "x86_64-unknown-linux-gnu"
#define R_CPU "x86_64"
#define R_VENDOR "unknown"
#define R_OS "linux-gnu"
#define Unix 1
#define R_ARCH ""
configure: exit 1
[r...@ip-216-55-136-29 R-2.8.1]#
[r...@ip-216-55-136-29 R-2.8.1]#
[r...@ip-216-55-136-29 R-2.8.1]#
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