This is a problem in your specification to R of the peculiarities of
your system, not in R itself. You have only specified some of the
settings you need, and in particular as you are using Fortran 90 code
and a shared R library you need more than a typical user would.
On Wed, 27 May 2009, l.bart...@gmail.com wrote:
Full_Name: Lukasz Andrzej Bartnik
Version: 2.8.1
Not current.
OS: RHELS 5.2
Submission from: (NULL) (194.181.94.250)
Compile R for 32 bit on a 64 bit machine:
unset LD_LIBRARY_PATH
unset R_LD_LIBRARY_PATH
export CC="gcc -m32"
export CXXFLAGS="-m32 -O2 -g"
export FFLAGS="-m32 -O2 -g"
export FCFLAGS="-m32 -O2 -g"
export OBJCFLAGS="-m32 -O2 -g"
export LIBnn=lib
Copied I suppose from the R-admin manual (without credit)? The
current version suggests
CC="gcc -m32"
F77="gfortran -m32"
FC=$(F77)
CXX="gcc -m32"
OBJC=$(CC)
LIBnn=lib
which I suspect you will find more successful. However, you seem not
to have studied the file config.site, which lists many settings you
may need to specify. Reading there, it seems that either
SHLIB_FCLD="gfortran -m32" or SHLIB_FCLDFLAGS="-shared -m32" would be
appropriate.
./configure --with-x=no --enable-R-shlib --prefix=/prefix
Now try to install a package which has Fortran files inside:
Hmm, has Fortran 90 files inside: these do not use the same settings
as 'Fortran'.
/prefix/bin/R CMD INSTALL crawl_1.0-4.tar.gz
* Installing to library '/prefix/lib/R/library'
* Installing *source* package 'crawl' ...
** libs
gfortran -fpic -m32 -O2 -g -c crwDriftN2ll.f90 -o crwDriftN2ll.o
gfortran -fpic -m32 -O2 -g -c crwDriftPredict.f90 -o crwDriftPredict.o
gfortran -fpic -m32 -O2 -g -c crwN2ll.f90 -o crwN2ll.o
gfortran -fpic -m32 -O2 -g -c crwPredict.f90 -o crwPredict.o
gfortran -shared -L/usr/local/lib -o crawl.so crwDriftN2ll.o crwDriftPredict.o
crwN2ll.o crwPredict.o -L/prefix/lib/R/lib -lR
/usr/bin/ld: skipping incompatible /prefix/lib/R/lib/libR.so when searching for
-lR
/usr/bin/ld: cannot find -lR
collect2: ld returned 1 exit status
make: *** [crawl.so] Error 1
ERROR: compilation failed for package 'crawl'
** Removing '/prefix/lib/R/library/crawl'
** Restoring previous '/prefix/lib/R/library/crawl'
This error can be avoided if /prefix/lib/R/etc/Makeconf is modified:
Remove: SHLIB_FCLD = gfortran
Insert: SHLIB_FCLD = gfortran -m32
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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