Hello -
I am making a first attempt at writing a simple C++ routine to print
out R objects (this is a simple proof-of-concept as part of a larger
package development). The relevant C++ routine is as follows:
void Rwrite(SEXP fd, SEXP msg) {
int *ofd = INTEGER(fd);
const char * omsg = CHAR(asChar(msg));
printf("[%i] %s",*ofd,omsg);
}
And the corresponding interface in R is as follows:
ptest <- function()
{
cfd <- as.integer(2);
cmsg <- as.character("Hi");
storage.mode(cfd) <- "integer";
storage.mode(cmsg) <- "character";
.Call("Rwrite",
fd=cfd,
msg=cmsg,
PACKAGE="forkex"
);
}
Upon running the above code as a call to `ptest()`, I receive a
segmentation fault. Building the package as `R CMD check
--use-valgrind ...` provides the following memcheck output:
> ptest();
==12591== Invalid read of size 1
==12591== at 0x4D04209: SET_SYMVALUE (in /usr/lib64/R/lib/libR.so)
==12591== by 0x4D01E51: Rf_ReplIteration (in /usr/lib64/R/lib/libR.so)
==12591== by 0x4D020B7: (within /usr/lib64/R/lib/libR.so)
==12591== by 0x4D027CF: run_Rmainloop (in /usr/lib64/R/lib/libR.so)
==12591== by 0x40083A: main (in /usr/lib64/R/bin/exec/R)
==12591== Address 0x9 is not stack'd, malloc'd or (recently) free'd
[2] Hi
*** caught segfault ***
address 0x9, cause 'memory not mapped'
aborting ...
==12591==
==12591== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 18 from 1)
==12591== malloc/free: in use at exit: 22,564,238 bytes in 10,614 blocks.
==12591== malloc/free: 29,096 allocs, 18,482 frees, 44,702,479 bytes allocated.
==12591== For counts of detected errors, rerun with: -v
==12591== searching for pointers to 10,614 not-freed blocks.
==12591== checked 19,665,464 bytes.
==12591==
==12591== LEAK SUMMARY:
==12591== definitely lost: 0 bytes in 0 blocks.
==12591== possibly lost: 0 bytes in 0 blocks.
==12591== still reachable: 22,564,238 bytes in 10,614 blocks.
==12591== suppressed: 0 bytes in 0 blocks.
==12591== Rerun with --leak-check=full to see details of leaked memory.
The same segmentation fault occurs whether I try passing either the
`int` or `character` or both (as in the above). I have not tried other
types. However, I have attempted various type conversions in the
Rdefines.h header, but cannot avoid the segmentation fault. This is
the only code in the proof-of-concept pacakage (aside from useDynLoad
related registration structures and the R_init_??? call).
I have a feeling it is something simple, but I am not well versed in R
package development at this point. Please let me know if other
information is helpful.
I am running Linux 2.6.27.30-170.2.82.fc10.x86_64 with R 2.10.0.
Thanks!
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