Simon, Thanks for your help. I uninstalled and reinstalled xcode and gfortran. I got it direct from the website this time :p All was happy on the configure and make install.
Cheers, Paul On 27 Nov 2009, at 03:14, Simon Urbanek wrote: > Paul, > > On Nov 26, 2009, at 9:03 PM, Homer Paul Benton wrote: > >> I'm currently using >> >> gcc --version >> i686-apple-darwin8-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5564) > > That is the wrong compiler - it's a Leopard compiler (Xcode 3.1/3.1.1 to be > precise - see that it says darwin8 which is even 10.4 = Tiger!). Your Xcode > seems to be seriously messed up -- I'd strongly recommend re-installing all > Xcode 3.2 (run sudo gfortran-uninstall before you start) and Fortran (either > the CRAN version or the Snow Leopard(!!) version from Tools). > > >> Copyright (C) 2007 Free Software Foundation, Inc. >> This is free software; see the source for copying conditions. There is NO >> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. >> >> sh-3.2# gfortran --version >> GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5564) >> Copyright (C) 2007 Free Software Foundation, Inc. >> >> GNU Fortran comes with NO WARRANTY, to the extent permitted by law. >> You may redistribute copies of GNU Fortran >> under the terms of the GNU General Public License. >> For more information about these matters, see the file named COPYING >> >> >> and xcode 3.2 (1610) >> >> At the risk of sounding stupid, I compiled the netCDF library and the >> compiliers seemed happy for that. ?!?! >> > > NetCDF doesn't use anything from the system so even wrong compilers won't > throw it off. > > Cheers, > Simon > > >> Cheers, >> >> Paul >> >> I downloaded and 'installed' the >> >> On 27 Nov 2009, at 00:54, Simon Urbanek wrote: >> >>> Paul, >>> >>> at a first glance that seems like an issue in your system to me since >>> the errors come from system headers and not from our code. Which >>> compilers are you using and which Xcode version? >>> >>> Cheers, >>> Simon >>> >>> >>> On Nov 26, 2009, at 1:16 PM, Homer Paul Benton wrote: >>> >>>> Dear R-gurus, >>>> >>>> I'm trying to compile R on my new mac. It's snow leopard. So far >>>> I've seemed to be doing pretty well. I've looked at >>>> >>>> http://cran.r-project.org/bin/macosx/tools/ >>>> >>>> http://r.research.att.com/exp/ >>>> >>>> http://r.research.att.com/building.html >>>> >>>> http://r.research.att.com/tools/ >>>> >>>> All of which have been very helpful. Looking at the threads I've got >>>> around some X11 issues that stopped the configure script working but >>>> now when I excute make I get the error below. Any ideas? >>>> >>>> Thanks in advance, >>>> >>>> Paul >>>> >>>> R is now configured for i386-apple-darwin10.2.0 >>>> >>>> Source directory: . >>>> Installation directory: /Library/Frameworks >>>> >>>> C compiler: gcc -arch x86_64 -std=gnu99 -g -O2 >>>> Fortran 77 compiler: gfortran -arch x86_64 -g -O2 >>>> >>>> C++ compiler: g++ -arch x86_64 -g -O2 >>>> Fortran 90/95 compiler: gfortran -arch x86_64 -g -O2 >>>> Obj-C compiler: gcc -arch x86_64 -g -O2 >>>> >>>> Interfaces supported: X11, aqua, tcltk >>>> External libraries: readline, BLAS(vecLib), LAPACK(in blas), >>>> ICU >>>> Additional capabilities: NLS >>>> Options enabled: framework, R profiling, Java >>>> >>>> Recommended packages: yes >>>> >>>> sh-3.2# echo "./configure SHELL='/bin/bash' r_arch=x86_64 CC="gcc - >>>> arch x86_64 -std=gnu99" CXX="g++ -arch x86_64" OBJC="gcc -arch >>>> x86_64" F77="gfortran -arch x86_64" FC="gfortran -arch x86_64" -- >>>> with-system-zlib --with-blas='-framework vecLib' --with-lapack --x- >>>> includes='-I/usr/X11/include/X11' --x-libraries='-L/usr/X11/lib' >>>> X_LIBS=-L/usr/X11/lib" > ~/R/compileR.txt >>>> >>>> >>>> sh-3.2# make >>>> make[1]: Nothing to be done for `R'. >>>> make[1]: Nothing to be done for `R'. >>>> make[2]: Nothing to be done for `R'. >>>> ..... >>>> ..... etc >>>> building package 'tools' >>>> all.R is unchanged >>>> make[6]: `Makedeps' is up to date. >>>> ../../../../library/tools/libs/x86_64/tools.so is unchanged >>>> building package 'utils' >>>> all.R is unchanged >>>> make[4]: Nothing to be done for `iconvlist'. >>>> building package 'grDevices' >>>> all.R is unchanged >>>> ../../../library/grDevices/R/grDevices is unchanged >>>> gcc -arch x86_64 -I../../../../include -I../../../../include/x86_64 - >>>> I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/ >>>> local/include -fPIC -g -O2 -c qdCocoa.m -o qdCocoa.o >>>> In file included from /System/Library/Frameworks/ >>>> Foundation.framework/Headers/NSCharacterSet.h:8, >>>> from /System/Library/Frameworks/Foundation.framework/ >>>> Headers/Foundation.h:15, >>>> from /System/Library/Frameworks/Cocoa.framework/ >>>> Headers/Cocoa.h:12, >>>> from qdCocoa.h:39, >>>> from qdCocoa.m:24: >>>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: >>>> 278: error: format string argument follows the args to be formatted >>>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: >>>> 280: error: format string argument follows the args to be formatted >>>> In file included from /System/Library/Frameworks/ >>>> Foundation.framework/Headers/Foundation.h:25, >>>> from /System/Library/Frameworks/Cocoa.framework/ >>>> Headers/Cocoa.h:12, >>>> from qdCocoa.h:39, >>>> from qdCocoa.m:24: >>>> /System/Library/Frameworks/Foundation.framework/Headers/ >>>> NSException.h:62: error: format string argument follows the args to >>>> be formatted >>>> qdCocoa.m: In function '+[QuartzCocoaView >>>> quartzWindowWithRect:andInfo:]': >>>> qdCocoa.m:90: warning: class 'QuartzCocoaView' does not implement >>>> the 'NSWindowDelegate' protocol >>>> make[5]: *** [qdCocoa.o] Error 1 >>>> make[4]: *** [mksrc] Error 1 >>>> make[3]: *** [all] Error 2 >>>> make[2]: *** [R] Error 1 >>>> make[1]: *** [R] Error 1 >>>> make: *** [R] Error 1 >>>> ______________________________________________ >>>> R-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/r-devel >>>> >>>> >>> >> >> >> > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
