Hi,
I think I had similar problems with gsl on a non-standard installation.
The following steps seemed to work (but are merely the results of
struggling around...)
1. Download and extract source code of R-package 'gsl'
2. Use gsl-config --libs to get the path to GSL's lib directory
(-L<path-to-lib>), use gsl-config --cflags to get the path to GSL's
include directory (-I<path-to-include>)
3. Change Makevars in gsl/src:
- Add -L<path-to-lib> to PKG_LIBS
- Add (new) line: PKG_CPPFLAGS=-I<path-to-include>
4. Install gsl via
LDFLAGS=-L<path-to-lib>;export
LDFLAGS;CPPFLAGS=-I<path-to-include>;export CPPFLAGS;R CMD INSTALL gsl
Best,
Martin
Hoptman, Matthew wrote:
Hi all,
I am new to R and am writing after having contacted Robin Hankin, who
maintains the R gsl wrapper.
I am trying to use an AFNI (neuroimaging analysis) program that depends
on the R gsl package. When I try to use the script I wrote, I get an
error that led me to suspect the gsl package was a culprit. When I do
library("gsl") within R, I get:
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/home/matt/R/lib64/R/library/gsl/libs/gsl.so':
/home/matt/R/lib64/R/library/gsl/libs/gsl.so: undefined symbol:
gsl_sf_expint_En_e
Error: package/namespace load failed for 'gsl'
It looks like it is due to where my Linux (not R) gsl package is
installed. Robin thought the problem is that I had to install my Linux
gsl package in a nontypical location (it's in /usr) because /usr/local
is not available to us.
He mentioned that others have had this problem. Has anyone been able to
surmount this problem?
Thanks,
Matt
PS. I'm running Suse Linux 10.3:
Linux ghidra 2.6.22.19-0.1-default #1 SMP 2008-10-14 22:17:43 +0200
x86_64 x86_64 x86_64 GNU/Linux
Matthew J. Hoptman, PhD
Research Scientist V
Nathan S. Kline Institute for Psychiatric Research
Research Associate Professor in Psychiatry
NYU School of Medicine
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Statistics and Econometrics
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