On Mon, Apr 26, 2010 at 11:15 AM, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> I am running into a problem with the 00LOCK file and .nfs files. It
> seemed to be caused by the following
> R is installed on NFS
> user A has loaded pkg_A containing a dynamically loaded library
> user B (the administrator) runs install.packages("pkg_A")
> as the final part of the installation process the 00LOCK directory is
> removed
> this creates a .nfs file because user A has the dynamic library open
> this .nfs file cannot be removed until user A exits R
> because of this, 00LOCK cannot be removed, and if the
> install.packages call is going to install packages after pkg_A, they
> fail
>
Yup, I've seen that. The program "lsof" can be useful to find which process
has the library open.
User A does not need to exit R; it's enough to detach(package:pkg_A);
library(pkg_A);.
Now, while there are certainly open questions concerning this, I have
> a pretty good idea of the problem, and I even have some ideas on how
> to fix it.
>
> But before I spent more time on this, I would like to hear how other
> people handle this. In my analysis, this is a problem whenever you
> have R installed on NFS, this R is used by multiple users and you
> often run update.packages to keep the installation current.
To nitpick: You don't even need multiple users. It could be one user with
multiple sessions (one running R interactively, the other installing).
Cheers,
/Christian
There must be plenty of people out there who do this. In other words:
> someone else must have had this problem before (and presumably fixed
> it). I don't know much (anything) about NFS, so perhaps this is
> caused by our NFS setup.
>
> Comments, before I spent more hours looking into this?
>
> Thanks,
> Kasper
>
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