Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system:
begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory `/tmp/RtmpWX7ecF/R.INSTALL2aaf76ad/cluster/src' gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c clara.c -o clara.o g77 -fpic -g -O2 -c daisy.f -o daisy.o g77 -fpic -g -O2 -c dysta.f -o dysta.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c fanny.c -o fanny.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g77 -fpic -g -O2 -c meet.f -o meet.o g77 -fpic -g -O2 -c mona.f -o mona.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c pam.c -o pam.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o gcc -std=gnu99 -I/u/radford/R/R-2.12.0-rel2/include -I/usr/local/include -fpic -g -O2 -c spannel.c -o spannel.o g77 -fpic -g -O2 -c twins.f -o twins.o gcc -std=gnu99 -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o meet.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/lib/gcc/i486-linux-gnu/3.4.6 -lg2c -lm make[3]: Leaving directory `/tmp/RtmpWX7ecF/R.INSTALL2aaf76ad/cluster/src' installing to /h/253/radford/R/R-2.12.0-rel2/library/cluster/libs ** R ** data ** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/h/253/radford/R/R-2.12.0-rel2/library/cluster/libs/cluster.so': /h/253/radford/R/R-2.12.0-rel2/library/cluster/libs/cluster.so: undefined symbol: cl_daisy_ ERROR: loading failed * removing '/h/253/radford/R/R-2.12.0-rel2/library/cluster' make[2]: *** [cluster.ts] Error 1 make[2]: Leaving directory `/h/253/radford/R/R-2.12.0-rel2/src/library/Recommended' make[1]: *** [recommended-packages] Error 2 make[1]: Leaving directory `/h/253/radford/R/R-2.12.0-rel2/src/library/Recommended' make: *** [stamp-recommended] Error 2 Here is the output of gcc -v for this system: Using built-in specs. Target: i486-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-targets=all --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu Thread model: posix gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu4) This R-2.12.0 installation generally works (based on testing a few trivial things). The same error occurs when trying to install 2.12.0 on Intel Solaris. Radford Neal ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
