Biobase is not self-contained so I cannot easily test it, but as far
as I know this is now resolved.
On Sun, 24 Oct 2010, Martin Morgan wrote:
If I try to build a package with a vignette
R CMD build Biobase
I see
* checking for file 'Biobase/DESCRIPTION' ... OK
* preparing 'Biobase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... OK
* cleaning src
Error in setwd(pkgname) : cannot change working directory
Execution halted
This is because prepare_pkg invoked at tools/R/build.R:605 changes the
directory (e.g., from /tmp/RtmprGGHhU/Rbuild257d6d93 to
/tmp/RtmprGGHhU/Rbuild257d6d93/Biobase), in turn because the on.exit at
build.R:223 is usurped by on.exit at build.R:256/259.
Martin
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
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