I've noticed a change in behavior in R 2.12.0 from 2.11.1 regarding the
treatment of absolute paths in the file argument of Sweave in a Windows
environment.
Consider the minimal Rnw file, attached and reproduced below my
signature in case .Rnw files get stripped. This file is stored on my
(Windows) computer in H:/My Documents. Using an absolute path with the
standard window's escaped backslahes path gives an error:
> Sweave("H:\\My Documents\\test.Rnw")
Writing to file test.tex
Processing code chunks ...
1 : echo term verbatim
Error: chunk 1
Error : '\M' is an unrecognized escape in character string starting "H:\M"
Nothing in the chuck explicitly references the path, but something
Sweave does triggers this. This did not happen in 2.11.1. Specifying
the path using slashes or as a relative path works.
> Sweave("H:/My Documents/test.Rnw")
Writing to file test.tex
Processing code chunks ...
1 : echo term verbatim
You can now run LaTeX on 'test.tex'
> Sweave("test.Rnw")
Writing to file test.tex
Processing code chunks ...
1 : echo term verbatim
You can now run LaTeX on 'test.tex'
I discovered this problem from a feature ESS has which has a keybinding
that executes Sweave using the command:
> local({..od <- getwd(); setwd("h:\\My Documents\\"); Sweave("h:\\My
Documents\\test.Rnw"); setwd(..od) })
Writing to file test.tex
Processing code chunks ...
1 : echo term verbatim
Error: chunk 1
Error : '\M' is an unrecognized escape in character string starting "h:\M"
I can certainly work around it by manually executing Sweave with slashed
or relative paths, but it is an inconvient change in behavior that I
don't recall seeing a reference to in NEWS.
I'm guessing something in Sweave is taking the string
"H:\\My Documents\\test.Rnw"
and turning it into
"H:\My Documents\test.Rnw"
which when treated as a string is not valid (as \M is not a valid
escape). However, I don't know what is doing this. Could it be related
to the ability to give context sensitive errors ("Parsing errors
detected during Sweave() processing will now be reported referencing
their original location in the source file.") which is new in 2.12.0?
> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
--
Brian S. Diggs, PhD
Senior Research Associate, Department of Surgery
Oregon Health & Science University
test.Rnw:
\documentclass{article}
\begin{document}
<<>>=
1
@
\end{document}
\documentclass{article}
\begin{document}
<<>>=
1
@
\end{document}
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