Dear all,
I'm writing a package and I would like to reuse the residuals() function. When
I use a function which calls the redefined residuals (for my custom class) I
get an error (see below). It looks like the wrong method is used. The strange
this is, that when it execute the code manually it get no error.
Any suggestions?
Best regards,
Thierry
The entire source code is at svn://scm.r-forge.r-project.org/svnroot/aflp
The code with the error.
> normalise(dummy)
Error in object$na.action : $ operator not defined for this S4 class
> traceback()
5: naresid(object$na.action, object$residuals) at normalise.R#30
4: residuals.default(outliers(data)) at normalise.R#30
3: residuals(outliers(data)) at normalise.R#30
2: nrow(residuals(outliers(data))) at normalise.R#30
1: normalise(dummy)
#This works fine
> data <- dummy
> nrow(residuals(outliers(data)))
[1] 0
NAMESPACE
importFrom(stats, residuals, resid, hclust, princomp)
exportPattern(".")
METHODS
setMethod("residuals", signature(object = "AFLP.outlier"),
function(object, ...){
object@Residual
}
)
setMethod("resid", signature(object = "AFLP.outlier"),
function(object, ...){
object@Residual
}
)
----------------------------------------------------------------------------
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek
team Biometrie & Kwaliteitszorg
Gaverstraat 4
9500 Geraardsbergen
Belgium
Research Institute for Nature and Forest
team Biometrics & Quality Assurance
Gaverstraat 4
9500 Geraardsbergen
Belgium
tel. + 32 54/436 185
thierry.onkel...@inbo.be
www.inbo.be
To call in the statistician after the experiment is done may be no more than
asking him to perform a post-mortem examination: he may be able to say what the
experiment died of.
~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data.
~ Roger Brinner
The combination of some data and an aching desire for an answer does not ensure
that a reasonable answer can be extracted from a given body of data.
~ John Tukey
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