Dear all,
Meanwhile I found my mistake.
I forgot to add class QualTreeSet to 'initialize-methods.Rd'.
However, I am not sure if I should make 'initialize' public at all.
Best regards
Christian
On 3/11/11 9:58 PM, cstrato wrote:
Dear all,
I am just writing the documentation file for S4 class 'QualTreeSet' and
get the following warning with R CMD check:
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'initialize' and siglist 'QualTreeSet'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
All my S4 classes have a method 'initialize' and R CMD check has never
complained. Thus, do you have any idea why I get suddenly this warning
for method 'initialize'?
Here is the code for 'QualTreeSet':
setClass("QualTreeSet",
representation(qualtype = "character",
qualopt = "character"
),
contains=c("ProcesSet"),
prototype(qualtype = "rlm",
qualopt = "raw"
)
)#QualTreeSet
setMethod("initialize", "QualTreeSet",
function(.Object,
qualtype = "rlm",
qualopt = "raw",
...)
{
if (qualtype == "") qualtype <- "rlm";
if (qualopt == "") qualopt <- "raw";
.Object <- callNextMethod(.Object,
qualtype = qualtype,
qualopt = qualopt,
...);
.Object@qualtype = qualtype;
.Object@qualopt = qualopt;
.Object;
}
)#initialize
However, here is my code for a similar class 'ExprTreeSet' (which is the
class from where I have copied the code):
setClass("ExprTreeSet",
representation(exprtype = "character",
normtype = "character"
),
contains=c("ProcesSet"),
prototype(exprtype = "none",
normtype = "none"
)
)#ExprTreeSet
setMethod("initialize", "ExprTreeSet",
function(.Object,
exprtype = "none",
normtype = "none",
...)
{
if (exprtype == "") exprtype <- "none";
if (normtype == "") normtype <- "none";
.Object <- callNextMethod(.Object,
exprtype = exprtype,
normtype = normtype,
...);
.Object@exprtype = exprtype;
.Object@normtype = normtype;
.Object;
}
)#initialize
In this case R CMD check does not complain, so why does it in the case
of 'QualTreeSet'?
Here is my:
> sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xps_1.11.4
Thank you in advance
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
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