>>>>> Douglas Bates <ba...@stat.wisc.edu> >>>>> on Mon, 28 Mar 2011 09:24:39 -0500 writes:
> Can you provide the output from sessionInfo() > so we can know the platform? Also, did you configure R > with --enable-strict-barrier or set the C compilation flag > -DTESTING_WRITE_BARRIER? I think that run-time error > message can only be thrown under those circumstances (not > that it isn't an error, it's just not checked for in other > circumstances). interesting. In the mean time, I *did* run --- for several hours! --- your code example below, and it did *not* segfault for me (64-bit, Linux Fedora 13). Martin >>>>> Douglas Bates <ba...@stat.wisc.edu> >>>>> on Mon, 28 Mar 2011 09:24:39 -0500 writes: > Can you provide the output from > sessionInfo() > so we can know the platform? Also, did you configure R with > --enable-strict-barrier or set the C compilation flag > -DTESTING_WRITE_BARRIER? I think that run-time error message can only > be thrown under those circumstances (not that it isn't an error, it's > just not checked for in other circumstances). > On Sat, Mar 26, 2011 at 5:21 PM, Hin-Tak Leung <hintak_le...@yahoo.co.uk> wrote: >> Current core/Recommended Matrix package (0.999375-48) has been segfaulting against R 2.13-alpha/2.14-trunk for the last week or so (since R-2.13 was branched, when I started trying) when "run with R CMD check --use-gct": >> >> -------------- >>> pkgname <- "Matrix" >>> source(file.path(R.home("share"), "R", "examples-header.R")) >>> gctorture(TRUE) >>> options(warn = 1) >>> library('Matrix') >> Loading required package: lattice >> Error : .onLoad failed in loadNamespace() for 'Matrix', details: >> call: fun(...) >> error: unprotected object (0x2768b18) encountered (was REALSXP) >> Error: package/namespace load failed for 'Matrix' >> Execution halted >> --------------- >> >> I traced to this because "R CMD check --use-gct snpStats" (both 1.1.13 and 1.1.12) segfaults with the same message, and before that, the snpMatrix 1.15.8.4 which includes some of David's newly written ld() ( which depends on Matrix.) >> >> If the Matrix package segfaults, David's new ld() isn't useable. >> >> ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel