The warning is there because all is not "just fine", in general and in particular not in your example.

If a superclass is not virtual, the prototype object for the new class must have a member of that class in the appropriate slot. How could it do so in this case? As a result, your class will return an invalid object from a call to new().

So one might argue that the current rules are too lax, and this should be an error.

The fundamental point is that S4 classes, as opposed to the new reference classes, don't deal in "references", self- or other.

Ways to deal with such recursive structures are discussed in section 9.7 of Software for Data Analysis.

One version of what you were perhaps trying to do might, for a binary tree, be:

> setClassUnion("MyNode", c("NULL", "vector"))
[1] "MyNode"
>
> setClass("FullNode", representation(left = "MyNode", right ="MyNode",
+   parent = "MyNode"))
[1] "FullNode"
> setIs("FullNode", "MyNode")

Nodes can be full, a vector as a leaf, or empty.

John

On 4/19/11 3:10 PM, James Bullard wrote:

I'm trying to do the following:

setClass("MyNode", representation(parent = "MyNode"))
[1] "MyNode"
Warning message:
undefined slot classes in definition of "MyNode": parent(class "MyNode")

I scanned the docs, but found nothing. The representation function has no
problem, it's the setClass function which gives the warning.

What I'm trying to understand is why have the warning - it seems to work
just fine when I instantiate the class. Can we add an argument to the
setClass to suppress the warning?

This question was asked previously, but not answered in any satisfactory way:

http://r.789695.n4.nabble.com/Linked-List-in-R-td3303021.html

thanks, jim




R version 2.12.2 Patched (2011-03-09 r54717)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] h5r_1.1

loaded via a namespace (and not attached):
[1] tools_2.12.2

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