On 11/05/2011 8:07 AM, Stefan McKinnon Høj-Edwards wrote:
Thanks. It worked.
I added the line "_R_CHECK_PKG_SIZES_=no" to /etc/Rcmd_environ (I am the only
user of this computer).
Regarding the 'du' executable, it is found in the first directory in the PATH
environment variable and came with Rtools for R 2.13.
R CMD check will try to run "du -k" while the current directory is the
one where it just installed the package during the check. If you do
that from the command line, (i.e. install AnnotationFuncs, switch to
RHOME/library/AnnotationFuncs, and run "du -k") what do you see as output?
Duncan Murdoch
Kind regards,
Stefan McKinnon Høj-Edwards
PhD student
Dept. of Genetics and Biotechnology
Faculty of Agricultural Sciences
Aarhus University
Blichers Allé 20, Postboks 50
DK-8830 Tjele
Tel.: +45 8999 1291
Email: stefanm.edwa...@agrsci.dk
Tel.: +45 8999 1900
Web: www.agrsci.au.dk
-----Oprindelig meddelelse-----
Fra: Prof Brian Ripley [mailto:rip...@stats.ox.ac.uk]
Sendt: 11. maj 2011 13:51
Til: Stefan McKinnon Høj-Edwards
Cc: r-devel@r-project.org
Emne: Re: [Rd] RCMD check fails on "checkin installed package size"
On Wed, 11 May 2011, Stefan McKinnon Høj-Edwards wrote:
> Hi,
>
> When I run RCMD check on my package, I receive the following error:
> C:\R-packages\AnnotationFuncs>RCMD check --no-vignettes AnnotationFuncs
> * using log directory 'C:/R-packages/AnnotationFuncs/AnnotationFuncs.Rcheck'
> * using R version 2.13.0 (2011-04-13)
> * using platform: i386-pc-mingw32 (32-bit)
> * using session charset: ISO8859-1
> * using option '--no-vignettes'
> * checking for file 'AnnotationFuncs/DESCRIPTION' ... OK
> * this is package 'AnnotationFuncs' version '1.1.2'
> * checking package name space information ... OK
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> * checking for executable files ... OK
> * checking whether package 'AnnotationFuncs' can be installed ... OK
> * checking installed package size ...Error in if (total> 1024 * 5) { :
missing
> value where TRUE/FALSE needed
> Execution halted
>
>
> I am running it on Windows 7 (32-bit) and my PATH environment variable
starts with this:
> C:\Rtools\bin;C:\Rtools\MinGW\bin;C:\Program Files\R\R-2.13.0\bin\i386;
>
> I have updated Rtools to the newest with 2.13.
>
> Any suggestions?
Set _R_CHECK_PKG_SIZES_ to 'no' (see 'Writing R Extensions' and its
references on customizing R CMD check), or correct your paths so the
'du' program in Rtools is the one that is found. (The only reported
example was from using a different 'du' program.)
I believe that current R-patched works around this: R-devel definitely
does.
>
> Thanks in advanced,
> Stefan McKinnon Høj-Edwards
>
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>
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