I would guess the error below is because of Java messing around in the hardware. It's pretty common on Windows for DLLs to attempt to change the precision setting on the floating point processor; I hadn't seen that before on Linux, but that would be my guess as to the cause.

It's also possible that one of the attached packages has messed with R functions somehow, e.g. by replacing the default print() or show() method.

A third possibility is that different math libraries are being used.

So I would consider the differences in the results to be a bit of a bug, but not one that is likely under our control, and not one that is so large that I would worry about working around it.

Duncan Murdoch

On 20/07/2011 8:03 AM, Jeroen Ooms wrote:
>>  I think Bill Dunlap's answer addressed it:  the claim appears to be false.

Here is another example where there is randomness that is not due to
the seed. On the same machine, the same R binary, but through another
interface. First directly in the shell:

>  sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: i686-pc-linux-gnu (32-bit)

locale:
  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

>  set.seed(123)
>  print(coef(lm(dist~speed, data=cars)),digits=22)
               (Intercept)                     speed
-17.579094890510951643137   3.932408759124087715975



# And this is through eclipse (java)

>  sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: i686-pc-linux-gnu (32-bit)

locale:
  [1] LC_CTYPE=en_US.UTF-8          LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8           LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=en_US.UTF-8       LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8          LC_NAME=en_US.UTF-8
  [9] LC_ADDRESS=en_US.UTF-8        LC_TELEPHONE=en_US.UTF-8
[11] LC_MEASUREMENT=en_US.UTF-8    LC_IDENTIFICATION=en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] rj_0.5.2-1

loaded via a namespace (and not attached):
[1] rJava_0.9-1  tools_2.13.1

>  set.seed(123)
>  print(coef(lm(dist~speed, data=cars)),digits=22)
              (Intercept)                    speed
-17.57909489051087703615   3.93240875912408460735

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