I am trying to build a package (GWASTools, submitted to Bioconductor)
that uses the "sandwich" package. I have references to "sandwich" in
DESCRIPTION:
Imports: methods, DBI, RSQLite, sandwich, survival, DNAcopy
and NAMESPACE:
import(sandwich)
In the code itself is a call to vcovHC:
Vhat <- vcovHC(mod, type="HC0")
I have sandwich version 2.2-7 installed.
When I run R CMD check on my package, I get the following error during
checking of examples:
* using R Under development (unstable) (2011-08-29 r56828)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
...
* checking examples ... ERROR
...
Error in estfun.glm(x) : could not find function "is.zoo"
Calls: assocTestRegression ... meatHC -> rowMeans -> is.data.frame ->
estfun -> estfun.glm
I import sandwich, sandwich depends on zoo, but a function in zoo cannot
be found during execution.
I tried to get around this by explicitly including a "require" statement
in assocTestRegression:
require(sandwich)
The example now runs, but I have a warning in R CMD check:
* checking for unstated dependencies in R code ... WARNING
‘library’ or ‘require’ call not declared from: ‘sandwich’
I am not sure why this is a problem, as there is a "require" statement
(for a different package) in another function which does not cause any
warnings.
Can anyone advise on how to get my package to successfully pass R CMD check?
thanks,
Stephanie Gogarten
Research Scientist, Biostatistics
University of Washington
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