Here you go (though I doubt it will be actually helpful): R version 2.13.1 (2011-07-08) Platform: i386-pc-mingw32/i386 (32-bit)
locale: [1] LC_COLLATE=Dutch_Belgium.1252 LC_CTYPE=Dutch_Belgium.1252 LC_MONETARY=Dutch_Belgium.1252 LC_NUMERIC=C [5] LC_TIME=Dutch_Belgium.1252 attached base packages: [1] grDevices datasets splines graphics stats tcltk utils methods base other attached packages: [1] addendum_1.4 snowfall_1.84 snow_0.3-7 mgcv_1.7-6 rgl_0.92.798 glmnet_1.7 [7] Matrix_0.9996875-3 lattice_0.19-33 svSocket_0.9-51 TinnR_1.0.3 R2HTML_2.2 Hmisc_3.8-3 [13] survival_2.36-9 loaded via a namespace (and not attached): [1] cluster_1.14.0 grid_2.13.1 nlme_3.1-102 svMisc_0.9-63 tools_2.13.1 Note that this is the sessionInfo from an interactive session. I don't know of an obvious way to provide you the sessionInfo of the session that is started by R CMD check (Assuming that at that point, an 'actual' R session has actually been started - it appears the error occurs before any 'real work' is started). Nick Sabbe -- ping: nick.sa...@ugent.be link: http://biomath.ugent.be wink: A1.056, Coupure Links 653, 9000 Gent ring: 09/264.59.36 -- Do Not Disapprove > -----Original Message----- > From: henrik.bengts...@gmail.com [mailto:henrik.bengts...@gmail.com] On > Behalf Of Henrik Bengtsson > Sent: donderdag 22 september 2011 17:59 > To: Duncan Murdoch > Cc: Nick Sabbe; r-devel@r-project.org > Subject: Re: [Rd] R CMD check file issues > > I'm on Windows 7 (64-bit) and everything works perfectly. Obviously, > there is either another process locking down a file with the same name > or the directory doesn't exist at the time of the file() call. > > Now to the most important question ...what's your sessionInfo()? > > /Henrik > > On Thu, Sep 22, 2011 at 5:33 AM, Duncan Murdoch > <murdoch.dun...@gmail.com> wrote: > > On 11-09-22 8:30 AM, Nick Sabbe wrote: > >> > >> Hi Duncan (and others). > >> > >> I've just turned off my virus scanner (MS Forefront Endpoint > Protection). > >> > >> The issue persists. It appears that the first time I call R CMD > check, it > >> deletes the previous rcheck folder, but tries to proceed before it > is > >> actually gone. By the time I reissue the command, the folder is > truly > >> gone, > >> and the R CMD check can safely do its work. > >> > >> Is anyone else here using Win7 (32bit) and successfully > building/checking > >> R > >> packages? Perhaps I'm the only one who has treaded this path :-) > > > > I do use Win7 on one machine, and have seen odd things happen, but > not what > > you describe. > > > > I imagine a simple workaround for you would be to delete the folder > before > > you call R CMD check (i.e. wrap R CMD check in a batch file to do > that), but > > it would be nice if that were not necessary. > > > > Duncan Murdoch > > > >> > >> > >> Nick Sabbe > >> -- > >> ping: nick.sa...@ugent.be > >> link: http://biomath.ugent.be > >> wink: A1.056, Coupure Links 653, 9000 Gent > >> ring: 09/264.59.36 > >> > >> -- Do Not Disapprove > >> > >> > >> > >> > >>> -----Original Message----- > >>> From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] > >>> Sent: donderdag 22 september 2011 14:20 > >>> To: Nick Sabbe > >>> Cc: r-devel@r-project.org > >>> Subject: Re: [Rd] R CMD check file issues > >>> > >>> On 11-09-22 7:53 AM, Nick Sabbe wrote: > >>>> > >>>> This problem is likely to be specific to Windows, and particularly > >>> > >>> Win7. > >>> > >>> The symptoms sound like interference from an anti-virus checker. > >>> > >>> Duncan Murdoch > >>> > >>>> > >>>> > >>>> After a successful build of a package (R CMD build addendum), I > >>> > >>> immediately > >>>> > >>>> run an R CMD check for the same package. > >>>> > >>>> Not always, but _very_ often, I get the following error: > >>>> > >>>> C:\Users\nisabbe\Documents\@Doctoraat\R>R CMD check addendum > >>>> > >>>> Loading required package: tcltk > >>>> > >>>> Loading Tcl/Tk interface ... done > >>>> > >>>> Loading required package: Hmisc > >>>> > >>>> Loading required package: survival > >>>> > >>>> Loading required package: stats > >>>> > >>>> Loading required package: graphics > >>>> > >>>> Loading required package: splines > >>>> > >>>> > >>>> > >>>> Attaching package: 'Hmisc' > >>>> > >>>> > >>>> > >>>> The following object(s) are masked from 'package:survival': > >>>> > >>>> > >>>> > >>>> untangle.specials > >>>> > >>>> > >>>> > >>>> The following object(s) are masked from 'package:base': > >>>> > >>>> > >>>> > >>>> format.pval, round.POSIXt, trunc.POSIXt, units > >>>> > >>>> > >>>> > >>>> Loading required package: R2HTML > >>>> > >>>> Warning in file(filename, "wt") : > >>>> > >>>> cannot open file > >>>> 'C:/Users/nisabbe/Documents/@Doctoraat/R/addendum.Rcheck/00ch > >>>> > >>>> eck.log': Permission denied > >>>> > >>>> Error in file(filename, "wt") : cannot open the connection > >>>> > >>>> Execution halted > >>>> > >>>> > >>>> > >>>> If, after this, I immediately reissue the R CMD check command, it > >>> > >>> works, > >>>> > >>>> without the error. > >>>> > >>>> I think this has something to do with how Win7 processes file > >>> > >>> handling > >>>> > >>>> (there are known issues even noticeable in windows explorer), but > >>> > >>> perhaps > >>>> > >>>> there is a way of circumventing this? It would be greatly > >>> > >>> appreciated, as > >>>> > >>>> this issue is preventing automation of build/check/install > scripts. > >>>> > >>>> > >>>> > >>>> Suggestions will be greatly appreciated. > >>>> > >>>> > >>>> > >>>> Nick Sabbe > >>>> > >>>> -- > >>>> > >>>> ping: nick.sa...@ugent.be > >>>> > >>>> link:<http://biomath.ugent.be/> http://biomath.ugent.be > >>>> > >>>> wink: A1.056, Coupure Links 653, 9000 Gent > >>>> > >>>> ring: 09/264.59.36 > >>>> > >>>> > >>>> > >>>> -- Do Not Disapprove > >>>> > >>>> > >>>> > >>>> > >>>> [[alternative HTML version deleted]] > >>>> > >>>> ______________________________________________ > >>>> R-devel@r-project.org mailing list > >>>> https://stat.ethz.ch/mailman/listinfo/r-devel > >> > >> > > > > ______________________________________________ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
