On 02/06/2012 04:46 AM, Titus von der Malsburg wrote:
On Sat, Feb 4, 2012 at 4:37 PM, Martin Morgan<mtmor...@fhcrc.org> wrote:
On 02/03/2012 02:49 AM, Titus von der Malsburg wrote:
Hi Titus -- use withCallingHandlers to capture the warning, and
invokeRestart() to continue after handling it.
withCallingHandlers({
warning('oops')
message('continuing')
}, warning=function(w) {
message('handling: ', conditionMessage(w))
invokeRestart("muffleWarning")
})
Thanks Martin! This is exactly what I was looking for. I saw the
invocation of muffledWarning in a few places when I googled warning
and error handlers but unfortunately I couldn't find explanations and
documentation about it. When I invoked muffledWarning in a warning
handler for tryCatch, I got a message saying that there's no restart
named like that. MuffledWarning is not mentioned in the man page of
withCallingHandlers. Also, figuring out basic stuff like that you can
add warning and error arguments to tryCatch was also not so easy. Is
there a document somewhere that explains handling of errors and
warnings in detail?
Hi Titus
I don't have a particular resource for you; others on the list might,
and google turned up some useful hits. "muffleWarning" is mentioned on
?warning, but in truth I first spotted it when looking at the source for
warning.
Martin
Titus
--
Computational Biology
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
Location: M1-B861
Telephone: 206 667-2793
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