Hi,

Found in the man page for update.packages:

   repos: character vector, the base URL(s) of the repositories to use,
          i.e., the URL of the CRAN master such as
          ‘"http://cran.r-project.org"’ or its Statlib mirror,
          ‘"http://lib.stat.cmu.edu/R/CRAN"’.Can be ‘NULL’ to install
          from local files (‘.tar.gz’ for source packages).

- Using "e.g." instead of "i.e." would seem more appropriate.

- But more importantly, is repos = NULL really supported for
  update.packages? I wonder where I need to place the local files
  for this to work. I tried to put them in the current working
  directory but that didn't work:

    > packageVersion("BSgenome")
    [1] ‘1.27.1’
    > dir()
    [1] "BSgenome_2.0.0.tar.gz"
    > update.packages(repos=NULL)

  This description of the 'repos' arg looks more like a copy/paste from
  the man page for install.packages that needed some edit.

- Another copy/paste is the \examples section for update.packages that
  shows in fact an example for install.packages, which is the same
  example that is shown in the man page for install.packages.

Could those minor things be corrected?

Thanks,
H.

--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fhcrc.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

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