Hi, see this about updating your gcc. Assuming you can do that: https://www.centos.org/forums/viewtopic.php?t=22240
Gabor On Mon, Sep 1, 2014 at 3:58 PM, Titus Barik <ti...@barik.net> wrote: > Hi all, > > I'm unable to compile R under an HPC system (which like many HPC systems > doesn't always have the latest and greatest software). The version of > GCC is 4.1.2 under CentOS 5.7. Running ./configure gives the following > output: > > R is now configured for x86_64-unknown-linux-gnu > > Source directory: . > Installation directory: /home/tbarik > > C compiler: gcc -std=gnu99 -I/home/tbarik/include > Fortran 77 compiler: gfortran -g -O2 > > C++ compiler: g++ -g -O2 > C++ 11 compiler: > Fortran 90/95 compiler: gfortran -g -O2 > Obj-C compiler: > > Interfaces supported: X11 > External libraries: readline > Additional capabilities: NLS > Options enabled: shared BLAS, R profiling > > Recommended packages: yes > > which I think looks good (at least, -std=gnu99 appears to be present). > However, when I try make, I receive the following dump during > installation of the Matrix package: > > * installing *source* package 'Matrix' ... > ** package 'Matrix' successfully unpacked and MD5 sums checked > ** libs > make[3]: Entering directory > `/state/partition1/tmp/RtmpCw7v7G/R.INSTALL3227fa892a3/Matrix/src' > mpicc -I/home/tbarik/src/R-3.1.1/include -DNDEBUG -DNTIMER > -I./SuiteSparse_config -I/usr/local/incl ude -fpic > -I/home/tbarik/include -c CHMfactor.c -o CHMfactor.o > In file included from CHMfactor.h:4, > from CHMfactor.c:2: > Mutils.h: In function 'inv_permutation': > Mutils.h:270: error: 'for' loop initial declaration used outside C99 > mode > In file included from Mutils.h:374, > from CHMfactor.h:4, > from CHMfactor.c:2: > t_sparseVector.c: In function 'dsparseVector_sub': > t_sparseVector.c:139: error: 'for' loop initial declaration used outside > C99 mode > In file included from Mutils.h:377, > from CHMfactor.h:4, > from CHMfactor.c:2: > t_sparseVector.c: In function 'isparseVector_sub': > t_sparseVector.c:139: error: 'for' loop initial declaration used outside > C99 mode > In file included from Mutils.h:380, > from CHMfactor.h:4, > from CHMfactor.c:2: > t_sparseVector.c: In function 'lsparseVector_sub': > t_sparseVector.c:139: error: 'for' loop initial declaration used outside > C99 mode > In file included from Mutils.h:383, > from CHMfactor.h:4, > from CHMfactor.c:2: > t_sparseVector.c: In function 'nsparseVector_sub': > t_sparseVector.c:139: error: 'for' loop initial declaration used outside > C99 mode > In file included from Mutils.h:386, > from CHMfactor.h:4, > from CHMfactor.c:2: > t_sparseVector.c: In function 'zsparseVector_sub': > t_sparseVector.c:139: error: 'for' loop initial declaration used outside > C99 mode > make[3]: *** [CHMfactor.o] Error 1 > make[3]: Leaving directory > `/state/partition1/tmp/RtmpCw7v7G/R.INSTALL3227fa892a3/Matrix/src' > ERROR: compilation failed for package 'Matrix' > * removing '/home/tbarik/src/R-3.1.1/library/Matrix' > make[2]: *** [Matrix.ts] Error 1 > > Any advice on what to do is greatly appreciated. > > Thanks, > > Titus > > > -- > Titus Barik, PE <ti...@barik.net> > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
