'make check-all' for current R has been showing this error in the middle for a few months now - any thought on fixing this? I think cmprsk should be either included in the recommended bundle, or the survival vignette to not depend on it. Having 'make check-all' showing glaring ERROR's for a few months seems to defeat the purpose of doing any checking at all via 'make check-all'.
FWIW, I did look at when/how the issue was introduced, but it appeared that svn://svn.r-forge.r-project.org/svnroot/survival is no longer being updated, and git://github.com/cran/survival.git only shows release jumps. Anyway, if first appears with survival 2.38-1 in February, and as the previous 2.37-7 was 13 months older, this info is of no use to anybody. I didn't write earlier as I thought the issue would go away at some point; but obviously this isn't the case after 3 months. ----------------------------------------------- ERROR Errors in running code in vignettes: when running code in ‘compete.Rnw’ ... > temp$fstat <- as.numeric(event) > temp$msex <- with(temp, 1 * (sex == "M")) > fgfit1 <- with(temp, crr(etime, fstat, cov1 = cbind(age, + msex, mspike), failcode = 2, cencode = 1, variance = TRUE)) When sourcing ‘compete.R’: Error: could not find function "crr" Execution halted * checking re-building of vignette outputs ... NOTE Error in re-building vignettes: ... Warning in coxph(Surv(futime, death) ~ group:age2 + sex + strata(group), : X matrix deemed to be singular; variable 23 24 25 Loading required package: cmprsk Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘cmprsk’ Error: processing vignette 'compete.Rnw' failed with diagnostics: chunk 15 (label = finegray) Error in eval(expr, envir, enclos) : could not find function "crr" Execution halted ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel