On 14/08/2015 15:19, Joe S wrote:
Hi R-devel,
I'm trying to get R 3.2.1 working on Haiku (an open source OS inspired by
BeOS, not Linux based) on i586. With a few small changes to library paths
and ifdefs I am able to get a seemingly working R binary. The build process
stops with the 'tools' package. The last lines from make are below.
Does anyone have any tips? I'm rather new to debugging at this low level.
Are there any checks I can do to the R binary to test if it works properly?
This does not seem to be about the R binary, but about dynamically
loaded modules. (All those export lines are non-standard, BTW, and your
output is not from an ab initio build so we don't know e.g. how tools.so
was built.) The meat is
> Error in .Call(PS_sigs, 1L) :
> first argument must be a string (of length 1) or native symbol
reference
That comes from package tools, which contains the R code
PS_sigs <- getDLLRegisteredRoutines("tools")[[c(".Call", "ps_sigs")]]
SIGHUP <- .Call(PS_sigs, 1L)
So, startup R from the top-level build directory with something like
env R_DEFAULT_PACKAGES=NULL bin/R
and at the prompt run
dyn.load("src/library/tools/src/tools.so")
getLoadedDLLs() # should include a line for tools
getDLLRegisteredRoutines("tools")
My guess is that does not list any symbols, in particular not ps_sigs.
We can only speculate as to what went wrong (visibility issues? Mapping
symbols to u/case? ...).
Cheers
Joe
***********************************************************************
make[3]: Entering directory `/Store/buildr/src/library/tools'
building package 'tools'
make[4]: Entering directory `/Store/buildr/src/library/tools'
all.R is unchanged
make[4]: Leaving directory `/Store/buildr/src/library/tools'
make[4]: Entering directory `/Store/buildr/src/library/tools'
make[5]: Entering directory `/Store/buildr/src/library/tools/src'
make[6]: Entering directory `/Store/buildr/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[6]: Leaving directory `/Store/buildr/src/library/tools/src'
make[5]: Leaving directory `/Store/buildr/src/library/tools/src'
make[4]: Leaving directory `/Store/buildr/src/library/tools'
make[4]: Entering directory `/Store/buildr/src/library/tools'
installing 'sysdata.rda'
export
ADDON_PATH="%A/add-ons:/boot/home/config/non-packaged/add-ons:/boot/home/config/add-ons:/boot/system/non-packaged/add-ons:/boot/system/add-ons"
export
BEINCLUDES="/boot/system/develop/headers;/boot/system/develop/headers/be;/boot/system/develop/headers/posix;/boot/system/develop/headers/glibc;/boot/system/develop/headers/cpp;/boot/system/develop/headers/be/app;/boot/system/develop/headers/be/device;/boot/system/develop/headers/be/interface;/boot/system/develop/headers/be/locale;/boot/system/develop/headers/be/media;/boot/system/develop/headers/be/midi;/boot/system/develop/headers/be/midi2;/boot/system/develop/headers/be/net;/boot/system/develop/headers/be/kernel;/boot/system/develop/headers/be/storage;/boot/system/develop/headers/be/support;/boot/system/develop/headers/be/game;/boot/system/develop/headers/be/opengl;/boot/system/develop/headers/be/drivers;/boot/system/develop/headers/gnu;/boot/system/develop/headers/be/mail;/boot/system/develop/headers/be/translation;/boot/system/develop/headers/be/devel;/boot/system/develop/headers/be/add-ons/graphics;/boot/system/develop/headers/be/be_apps/Deskbar;/boot/system/develop/h!
ea!
ders/be/be_apps/NetPositive;/boot/system/develop/headers/be/be_apps/Tracker"
export BE_HOST_CPU="x86"
export BUILDHOME="/boot/system/develop"
export GROUP="root"
export HISTCONTROL="ignoredups"
export HISTFILESIZE="500"
export HOME="/boot/home"
export JAVA_HOME="/packages/openjdk-1.7_2013_11_08-2/.self/lib/openjdk"
export LC_ALL="C"
export LC_COLLATE="en.UTF-8"
export LC_CTYPE="en.UTF-8"
export LC_MESSAGES="en.UTF-8"
export LC_MONETARY="en.UTF-8"
export LC_NUMERIC="en.UTF-8"
export LC_TIME="en.UTF-8"
export LC_TYPE="en_US.UTF-8"
export
LIBRARY_PATH="%A/lib:/boot/home/config/non-packaged/lib:/boot/home/config/lib:/boot/system/non-packaged/lib:/boot/system/lib:/Store/buildr/lib"
export
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;43:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.!
vo!
b=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:"
export MAKEFLAGS="w"
export MAKELEVEL="5"
export MFLAGS="-w"
export OLDPWD
export
PATH=".:/boot/home/config/non-packaged/bin:/boot/home/config/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences"
export PWD="/Store/buildr/src/library/tools"
export R_DEFAULT_PACKAGES="NULL"
export R_DOC_DIR="/Store/buildr/doc"
export R_ENVIRON=""
export R_ENVIRON_USER=""
export R_HOME="/Store/buildr"
export R_INCLUDE_DIR="/Store/buildr/include"
export R_PROFILE=""
export R_PROFILE_USER=""
export R_SHARE_DIR="/Store/buildr/share"
export SAFEMODE="no"
export SED="/bin/sed"
export SHLVL="7"
export TERM="xterm"
export TTY="/dev/tt/p1"
export TTYPE="UTF-8"
export USER="user"
export XDG_CACHE_HOME="/boot/home/config/cache"
export XDG_CONFIG_DIRS="/boot/system/settings"
export XDG_CONFIG_HOME="/boot/home/config/settings"
export XDG_DATA_DIRS="/boot/system/non-packaged/data:/boot/system/data"
export XDG_DATA_HOME="/boot/home/config/non-packaged/data"
Error in .Call(PS_sigs, 1L) :
first argument must be a string (of length 1) or native symbol reference
Error: unable to load R code in package 'tools'
Execution halted
make[4]: *** [sysdata] Error 1
make[4]: Leaving directory `/Store/buildr/src/library/tools'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/Store/buildr/src/library/tools'
make[2]: *** [R] Error 1
make[2]: Leaving directory `/Store/buildr/src/library'
make[1]: *** [R] Error 1
make[1]: Leaving directory `/Store/buildr/src'
make: *** [R] Error 1
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
1 South Parks Road, Oxford OX1 3TG, UK
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