Hi.
Just wanted to let you know I am getting close to packaging R for AIX in
64.bit mode.
One comment - the libtool.m4 I see used is quite old. The one I have on my
system is 2.4.6, and what I see in R says:
I am hoping a new libtool will clean up most of the manual work now needed.
# Which release of libtool.m4 was used?
macro_version=2.2.6
macro_revision=1.3012
This may be all that is needed to cleanup what I am doing manually.
working with gcc I have done the following for 64-bit building
export OBJECT_MODE=64
export CFLAGS="-maix64 -O2"
export FFLAGS="-maix64 -O2"
export LDFLAGS="-lpthread"
Note - it does not look as if LDFLAGS is actually being picked up, but
maybe I had a typo.
The first error I get is:
Target "libunix.a" is up to date.
gcc -std=gnu99 -I. -I../../src/include -I../../src/include
-I/opt/buildaix/include -I/opt/include -DHAVE_CONFIG_H -mminimal-toc
-I/opt/include -I/opt/buildaix/include -maix64 -O2 -L/usr/local/lib
-DR_HOME='"/data/prj/cran/64/R-3.2.2"' -o Rscript ./Rscript.c
gcc -std=gnu99 -Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000
-Wl,-bpD:0x110000000 -lc -Wl,-bE:../../etc/R.exp -L/usr/local/lib -o
R.bin Rmain.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o
arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o
colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o
deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o
engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o
graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o
lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o
names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o
print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o
registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o
source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o
summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o
g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o
../nmath/*.o` ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a
../extra/tre/libtre.a ../extra/xz/liblzma.a ../extra/intl/libintl.a
-lgfortran -lm /opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/ppc64/libgcc.a
-lz -lrt -ldl -lm -liconv
ld: 0711-738 ERROR: Input file /lib/crt0.o:
XCOFF32 object files are not allowed in 64-bit mode.
This is repaired by adding the -maix64 flag again to the gcc comand used to
link.
The following steps - first cut/paste the original command, then add -maix64
root@x072:[/data/prj/cran/64/R-3.2.2]cd src/main
root@x072:[/data/prj/cran/64/R-3.2.2/src/main]ran -lm
/opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/ppc64/libgcc.a -lz -lrt -ldl
-lm -liconv <
ld: 0711-738 ERROR: Input file /lib/crt0.o:
XCOFF32 object files are not allowed in 64-bit mode.
collect2: error: ld returned 8 exit status
root@x072:[/data/prj/cran/64/R-3.2.2/src/main] gcc -maix64 -std=gnu99
-Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000 -Wl,-bpD:0x110000000 -lc
-Wl,-bE:../../>
ld: 0711-415 WARNING: Symbol BM_norm_keep is already exported.
ld: 0711-415 WARNING: Symbol LoadInitFile is already exported.
ld: 0711-415 WARNING: Symbol N01_kind is already exported.
ld: 0711-415 WARNING: Symbol R_ReadItemDepth is already exported.
ld: 0711-224 WARNING: Duplicate symbol: BM_norm_keep
ld: 0711-224 WARNING: Duplicate symbol: N01_kind
ld: 0711-224 WARNING: Duplicate symbol: LoadInitFile
ld: 0711-224 WARNING: Duplicate symbol: R_ReadItemDepth
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
ld: 0711-317 ERROR: Undefined symbol: .pthread_mutex_lock
ld: 0711-317 ERROR: Undefined symbol: .pthread_mutex_unlock
collect2: error: ld returned 8 exit status
root@x072:[/data/prj/cran/64/R-3.2.2/src/main]
Now add the -lpthread
gcc -maix64 -std=gnu99 -Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000
-Wl,-bpD:0x110000000 -lc -Wl,-bE:../../etc/R.exp -L/usr/local/lib -o
R.bin Rmain.o Comma
ndLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o
array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o
connections.o
context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o
dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o
format.o gevent
s.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o
internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o
mapply.o match.o
memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o
plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o
raw.o regi
stration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o
source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o
summary.o sysuti
ls.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o
g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o`
../extra/bzip2/
libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a
../extra/xz/liblzma.a ../extra/intl/libintl.a -lgfortran -lm
/opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7
.4/ppc64/libgcc.a -lz -lrt -ldl -lm -liconv -lpthread
gcc -maix64 -std=gnu99 -Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000
-Wl,-bpD:0x110000000 -lc -Wl,-bE:../../etc/R.exp -L/usr/local/lib -o
R.bin Rmain.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o
arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o
colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o
deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o
engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o
graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o
lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o
names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o
print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o
registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o
source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o
summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o
g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o
../nmath/*.o` ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a
../extra/tre/libtre.a ../extra/xz/liblzma.a ../extra/intl/libintl.a
-lgfortran -lm /opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/ppc64/libgcc.a
-lz -lrt -ldl -lm -liconv -lpthread
ld: 0711-415 WARNING: Symbol BM_norm_keep is already exported.
ld: 0711-415 WARNING: Symbol LoadInitFile is already exported.
ld: 0711-415 WARNING: Symbol N01_kind is already exported.
ld: 0711-415 WARNING: Symbol R_ReadItemDepth is already exported.
ld: 0711-224 WARNING: Duplicate symbol: BM_norm_keep
ld: 0711-224 WARNING: Duplicate symbol: N01_kind
ld: 0711-224 WARNING: Duplicate symbol: LoadInitFile
ld: 0711-224 WARNING: Duplicate symbol: R_ReadItemDepth
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
Note: this is with 3.2.2 - with 3.1.3 I did not get the Duplicate symbols.
(Using the same command in the 3.1.3 directory shows there are some other
differences)
root@x072:[/data/prj/cran/64/R-3.1.3/src/main]gcc -maix64 -std=gnu99
-Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000 -Wl,-bpD:0>
gcc: error: g_alab_her.o: A file or directory in the path name does not
exist.
gcc: error: g_cntrlify.o: A file or directory in the path name does not
exist.
gcc: error: g_fontdb.o: A file or directory in the path name does not exist.
gcc: error: g_her_glyph.o: A file or directory in the path name does not
exist.
so, since I am getting farther with 3.1.3 - I shall continue this
INFORMATIONAL post.
root@x072:[/data/prj/cran/64/R-3.1.3/src/main]rm R.bin
root@x072:[/data/prj/cran/64/R-3.1.3/src/main]gcc -std=gnu99 -Wl,-brtl
-Wl,-bexpall -Wl,-bpT:0x100000000 -Wl,-bpD:0x110000000 -lc
-Wl,-bE:../../etc/R.exp -L/usr/l>
ld: 0706-020 The number 0x100000000 is too large for the -b pT option.
Use a value that is 4294967295 (hex FFFFFFFF) or less.
ld: 0706-020 The number 0x110000000 is too large for the -b pD option.
Use a value that is 4294967295 (hex FFFFFFFF) or less.
collect2: error: ld returned 255 exit status
root@x072:[/data/prj/cran/64/R-3.1.3/src/main]gcc -maix64 -std=gnu99
-Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000 -Wl,-bpD:0x110000000 -lc
-Wl,-bE:../../etc/R.exp >
ld: 0711-317 ERROR: Undefined symbol: .pthread_mutex_lock
ld: 0711-317 ERROR: Undefined symbol: .pthread_mutex_unlock
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
collect2: error: ld returned 8 exit status
root@x072:[/data/prj/cran/64/R-3.1.3/src/main]bm-aix5.3.0.0/4.7.4/ppc64/libgcc.a
-lrt -ldl -lm -liconv -lpthread
This is a kind of error that occurs frequently - the argument -shared
causes "issues"
Target "libRlapack.so" is up to date.
/data/prj/cran/64/R-3.1.3/lib/libRlapack.so is unchanged
gcc -std=gnu99 -shared -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry
-lc -L/usr/local/lib -o lapack.so Lapack.o -L../../../lib -lRlapack
-lgfortran -lm /opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/ppc64/libgcc.a
ld: 0711-736 ERROR: Input file Lapack.o:
XCOFF64 object files are not allowed in 32-bit mode.
collect2: error: ld returned 8 exit status
make: 1254-004 The error code from the last command is 1.
changing -shared for -maix64 has "fixed" it up to now - Now however, back
to duplicate symbols:
gcc: error: Lapack.o: A file or directory in the path name does not exist.
root@x072:[/data/prj/cran/64/R-3.1.3/src/modules]cd lapack
root@x072:[/data/prj/cran/64/R-3.1.3/src/modules/lapack] gcc -std=gnu99
-shared -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry -lc -L/usr/local/lib
-o lapack.so Lapac>
ld: 0711-736 ERROR: Input file Lapack.o:
XCOFF64 object files are not allowed in 32-bit mode.
collect2: error: ld returned 8 exit status
root@x072:[/data/prj/cran/64/R-3.1.3/src/modules/lapack]gcc -std=gnu99
-maix64 -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry -lc -L/usr/local/lib
-o lapack.so Lapac>
ld: 0711-224 WARNING: Duplicate symbol: p_xargc
ld: 0711-224 WARNING: Duplicate symbol: p_xargv
ld: 0711-224 WARNING: Duplicate symbol: p_xrcfg
ld: 0711-224 WARNING: Duplicate symbol: p_xrc
ld: 0711-224 WARNING: Duplicate symbol: end
ld: 0711-224 WARNING: Duplicate symbol: .memcpy
ld: 0711-224 WARNING: Duplicate symbol: memcpy
ld: 0711-224 WARNING: Duplicate symbol: .bcopy
ld: 0711-224 WARNING: Duplicate symbol: bcopy
ld: 0711-224 WARNING: Duplicate symbol: .strcmp
ld: 0711-224 WARNING: Duplicate symbol: strcmp
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
root@x072:[/data/prj/cran/64/R-3.1.3/src/modules/lapack]
So, for today, my story ends with
gcc -Wl,-bloadmap:aixtools -std=gnu99 -maix64 -Wl,-brtl -Wl,-G
-Wl,-bexpall -Wl,-bnoentry -lc -L/usr/local/lib -o lapack.so Lapack.o
-L../../../lib -lRlapack -lgfortran -lm
/opt/lib/gcc/powerpc-ibm-aix5.3.0.0/4.7.4/ppc64/libgcc.a
ld: 0711-228 WARNING: Duplicate symbols were found while resolving symbols.
The following duplicates were found:
Symbol Source-File(Object) OR Import-File{Shared-object}
------------------------- -------------------------------------------------
p_xargc crt0_64.s(/lib/crt0_64.o)
** Duplicate ** {../../../lib/libRlapack.so}
p_xargv crt0_64.s(/lib/crt0_64.o)
** Duplicate ** {../../../lib/libRlapack.so}
p_xrcfg crt0_64.s(/lib/crt0_64.o)
** Duplicate ** {../../../lib/libRlapack.so}
p_xrc crt0_64.s(/lib/crt0_64.o)
** Duplicate ** {../../../lib/libRlapack.so}
end crt0_64.s(/lib/crt0_64.o)
** Duplicate ** {../../../lib/libRlapack.so}
.memcpy moveeq.s(/usr/lib/libc.a[moveeq_64.o])
** Duplicate ** {../../../lib/libRlapack.so}
memcpy moveeq.s(/usr/lib/libc.a[moveeq_64.o])
** Duplicate ** {../../../lib/libRlapack.so}
.bcopy moveeq.s(/usr/lib/libc.a[moveeq_64.o])
** Duplicate ** {../../../lib/libRlapack.so}
bcopy moveeq.s(/usr/lib/libc.a[moveeq_64.o])
** Duplicate ** {../../../lib/libRlapack.so}
.strcmp strcmp.s(/usr/lib/libc.a[strcmp_64.o])
** Duplicate ** {../../../lib/libRlapack.so}
strcmp strcmp.s(/usr/lib/libc.a[strcmp_64.o])
** Duplicate ** {../../../lib/libRlapack.so}
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