Dear all,
I've stumbled a similar issue with the package cluster when
compiling the 3.4.0 version with the settings of Fedora RPM specs.
Compiling R with the default setting of configure yields a version that
works for cluster... and nlme.
I did not find the exact option that was the cause of this issue
but I'm willing to help.
Erwan
PS: This is the reason why R is still at version 3.3.3 on the Fedora
distribution.
On 10/05/17 22:59, Langbehn, Douglas wrote:
lme() and gls() models from the nlme package are all crashing with R.3.4.0.
Identical code ran correctly, without error in R 3.3.3 and earlier versions.
The behavior is easily demonstrated using one of the examples form the lme()
help file, along with two simple variants. I have commented the errors
generated by these calls, as well as the lines of code generating them, in the
code example below.
As of today, this bug had not been reported on the R Bugzilla page. I could not submit
this report directly to the page because I am not a member, and , as explained in the
"Reporting Bugs" link from the R home page, membership has now been closed due
to spamming problems..
############################################################################
library(nlme)
#Using version 3.1-131
#Windows 7 64-bit operating system
fm2 <- lme(distance ~ age + Sex, data = Orthodont, random = ~ 1)
# Error in array(c(rep(1, p), .C(inner_perc_table, as.double(X),
as.integer(unlist(grps)), :
# object 'inner_perc_table' not found
#
#Upon debugging, this error is thrown with line 135 of lme.formula() code.
#
#fixDF <- getFixDF(X, grps, attr(lmeSt, "conLin")$dims$ngrps,
lme(distance ~ age + Sex, data = Orthodont, random = ~ 1|Subject)
# Error in array(c(rep(1, p), .C(inner_perc_table, as.double(X),
as.integer(unlist(grps)), :
# object 'inner_perc_table' not found
gls(distance ~ age + Sex, data = Orthodont,
correlation = corCompSymm( form = ~ 1 | Subject))
# Error in corMatrix.corCompSymm(object) :
# object 'compSymm_matList' not found
#
#Upon debugging, the error is thrown by line 60 of gls code
#
#glsSt <- Initialize(glsSt, dataMod, glsEstControl)
R.version
# _
# platform x86_64-w64-mingw32
# arch x86_64
# os mingw32
# system x86_64, mingw32
# status
# major 3
# minor 4.0
# year 2017
# month 04
# day 21
# svn rev 72570
# language R
# version.string R version 3.4.0 (2017-04-21)
# nickname You Stupid Darkness
########################################################################
Douglas R Langbehn MD, PhD
Professor
Dept. of Psychiatry and Biostatistics (secondary)
University of Iowa Carver College of Medicine
douglas-langb...@uiowa.edu
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