Thanks for the report - this has been already reported as bug 17376, it
is caused by scripts that build the Windows binaries and by now has been
fixed in R-patched and R-devel snapshot builds. So as a solution that
works now I would recommend using R-patched.
Tomas
On 02/13/2018 08:33 AM, Søren Højsgaard wrote:
I can confirm the behaviour that you report.
Usually I put Rtools in c:\programs\Rtools and modify the path
accordingly. Recently (don't recall for how long) I have encountered
the same problems as you have and I have resorted to moving Rtools to
c:\Rtools
I have no idea as how to proceed; perhaps it could be worth trying an
older version of Rtools (though that may cause other problems).
Regards
Søren
On Mon, 2018-02-12 at 22:45 -0800, Peter Langfelder wrote:
Hi all,
I'm trying to set up the Windows Rtools toolset for building packages
with compiled code. I installed for Windows R-3.4.3 from CRAN and
installed Rtools-3.4 in a custom location M:\R\R-3.4.3 and
M:\R\Rtools-3.4
Following the instructions, in shell, I set
Path=M:\R\Rtools-3.4\bin;M:\R\Rtools-3.4\gcc-4.6.3\bin;M:\R\R-
3.4.3\bin;...
(the ... are other paths irrelevant for R/Rtools).
When I run
M:\Work\RLibs>R.exe CMD INSTALL --build WGCNA
I get the following ouput:
In R CMD INSTALL
* installing to library 'M:/R/R-3.4.3/library'
* installing *source* package 'WGCNA' ...
** libs
*** arch - i386
c:/Rtools/mingw_32/bin/g++ -I"M:/R/R-3.4.3/include" -DNDEBUG
-O2 -Wall -mtune=generic -c bucketApproxSort.cc
-o bucketApproxSort.o
c:/Rtools/mingw_32/bin/g++: not found
make: *** [bucketApproxSort.o] Error 127
Warning: running command 'make -f "Makevars.win" -f
"M:/R/R-3.4.3/etc/i386/Makeconf" -f "M:/R/R-3.4.3/share/make/winshli
b.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)'
SHLIB="WGCNA.dll" OBJECTS="bucketApproxSort.o corFun
ctions-common.o corFunctions-unified.o networkFunctions.o pivot.o
quantileC.o"' had status 2
ERROR: compilation failed for package 'WGCNA'
* removing 'M:/R/R-3.4.3/library/WGCNA'
* restoring previous 'M:/R/R-3.4.3/library/WGCNA'
Apparently the install is looking for Rtools in c:\Rtools. I am a
perpetual Windows newbie and would be really thankful for any
pointers
as to how to proceed.
Peter
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