Dear Russ,
I had the same problem in my vignettes and setting both message and warning
to FALSE seems to remove all unwanted output:
```{r message=FALSE, warning=FALSE}
library("afex")
library("ggplot2")
library("cowplot")
theme_set(theme_grey())
```
Result:
https://cran.r-project.org/web/packages/afex/vignettes/afex_plot_introduction.html
Best,
Henrik
Am Di., 23. Juli 2019 um 14:52 Uhr schrieb Ben Bolker <bbol...@gmail.com>:
>
> Does setting message=FALSE in the chunk options of the vignette help?
>
> Or less preferably, using supressMessages() ?
>
> On 2019-07-23 9:36 a.m., Lenth, Russell V wrote:
> > Lionel,
> >
> > Thanks for your response. I understand that method overriding can be a
> serious issue, but as you say, this is not something that the user can act
> upon. Yet the message lands at the user’s feet.
> >
> > In my case, the messages are cluttering my package vignettes, and may or
> may not represent what users see if they themselves run the vignette code,
> depending on what version of ggplot2, etc. they have. I will certainly
> update my ggplot2 installation and that will help. But basically I don’t
> ever want these kinds of messages to appear in my vignettes, so I will seek
> some other workaround.
> >
> > Russ
> >
> > Sent from my iPhone
> >
> >> On Jul 23, 2019, at 1:32 AM, Lionel Henry <lio...@rstudio.com> wrote:
> >>
> >> Hello,
> >>
> >> I think `quietly` should only silence normal masking messages
> >> intended for users and providing information about normal
> >> behaviour, such as masking. This is not the case here as the
> >> message is about overriding of S3 methods, which has global
> >> effect and is rather problematic. It may change behaviour of
> >> package and script code in unpredictable ways.
> >>
> >> This is not something that the user can act upon, the developers
> >> of the parties involved need to be contacted by users so they can
> >> fix it (the developers of the conflicting methods might not be
> >> aware if the generic is from a third party package, such as
> >> base::print()). In the case of ggplot2 vs rlang, you can update
> >> ggplot2 to the latest version to fix these messages.
> >>
> >>> After all, other package startup messages ARE suppressed, and
> >>> even error messages are suppressed
> >>
> >> Note that `quietly = TRUE` does not really suppress error
> >> messages for missing packages. The errors are converted to a
> >> boolean return value, and thus become normal behaviour, for which
> >> it makes sense to suppress the message. This does not imply the
> >> S3 overriding message should be suppressed as well.
> >>
> >> Best,
> >> Lionel
> >>
> >>
> >>> On 23 Jul 2019, at 06:29, Lenth, Russell V <russell-le...@uiowa.edu>
> wrote:
> >>>
> >>> Dear R-devel,
> >>>
> >>> Consider the following clip (in R version 3.6.0, Windows):
> >>>
> >>>> requireNamespace("ggplot2", quietly = TRUE)
> >>> Registered S3 methods overwritten by 'ggplot2':
> >>> method from
> >>> [.quosures rlang
> >>> c.quosures rlang
> >>> print.quosures rlang
> >>>
> >>> It seems to me that if one specifies 'quietly = TRUE', then messages
> about S3 method overrides should be quieted along with everything else.
> After all, other package startup messages ARE suppressed, and even error
> messages are suppressed:
> >>>
> >>>> requireNamespace("xyz", quietly = TRUE)
> >>>> ## (it is silent even though there is no "xyz" package)
> >>>
> >>> Thanks
> >>>
> >>> Russ Lenth
> >>> U of Iowa
> >>>
> >>> ______________________________________________
> >>> R-devel@r-project.org mailing list
> >>> https://stat.ethz.ch/mailman/listinfo/r-devel
> >>
> > ______________________________________________
> > R-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-devel
> >
>
> ______________________________________________
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
--
Dr. Henrik Singmann
Assistant Professor, Department of Psychology
University of Warwick, UK
http://singmann.org
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