Thanks Prof. Brian, Currently I’m using oneapi 2022.1.0 in particular ifort 2021.6.0 20220226 (not ifx).
Thanks for the clarification. Regards, Giuseppe. ——————————————————————————————————————— Giuseppe Calò Fondazione CMCC Centro Euro-Mediterraneo sui Cambiamenti Climatici presso Complesso Ecotekne Università del Salento - Strada Prov.le Lecce - Monteroni 73100 Lecce IT http://www.cmcc.it https://goo.gl/maps/wtahPDbNVen mobile: (+39) 3208190020 email: giuseppe.c...@cmcc.it *Le informazioni contenute in questo messaggio di posta elettronica e negli allegati se presenti sono riservate e confidenziali: ne è vietata la diffusione in qualsiasi modo o forma (GDPR 2016/679).Qualora lei non fosse il destinatario del messaggio, la invito a non diffonderlo e ad eliminarlo dandone gentilmente comunicazione al mittente.* *The information included in this e-mail and any attachments are confidential and may also be privileged (GDPR 2016/679).* *If you are not the correct recipient, you are kindly requested to notify the sender immediately, to cancel it and not disclose the contents to any other person.* Il giorno mar 18 lug 2023 alle ore 11:18 Prof Brian Ripley < rip...@stats.ox.ac.uk> ha scritto: > Note that 'intel 2022' is a bit vague. The current version is 2023.1.0, > and that has both the 'classic' (icc/icpc/ifort which it seems you used) > and new (icx/ixpx/ifx) compilers -- the former are said to be going to > be discontinued later this year. R did not know about ifx so did not > build with the new set. > > The parts of the manual Tomas referred to were about the old compilers: > the manual has now been re-written in R-devel and R-patched to major on > the newer ones. We have patched the code to work with both old and new > compilers, pending a more thorough investigation of matherr. > > In our experiments Intel Fortran only worked in conjunction with oneAPI > MKL -- see the manual. It seems ifx is still under development, so it > should pay to use only the latest versions. > > This is the first report on Intel compilers since 2015, so they are > rather low priority for the R developers. > > > On 21/06/2023 08:10, Tomas Kalibera wrote: > > > > On 6/20/23 18:47, Giuseppe Calò wrote: > >> Hi all, > >> I have the issue: > >> > >> icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. > >> -I../../src/include -I../../src/include -I/usr/local/include > >> -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip > >> -mp -c eval.c -o eval.o > >> arithmetic.c(66): warning #274: declaration is not visible outside of > >> function > >> int matherr(struct exception *exc) > >> ^ > >> > >> arithmetic.c(68): error: pointer to incomplete class type is not allowed > >> switch (exc->type) { > >> ^ > >> > >> arithmetic.c(69): error: identifier "DOMAIN" is undefined > >> case DOMAIN: > >> ^ > >> > >> arithmetic.c(70): error: identifier "SING" is undefined > >> case SING: > >> ^ > >> > >> arithmetic.c(73): error: identifier "OVERFLOW" is undefined > >> case OVERFLOW: > >> ^ > >> > >> arithmetic.c(76): error: identifier "UNDERFLOW" is undefined > >> case UNDERFLOW: > >> ^ > >> > >> arithmetic.c(77): error: pointer to incomplete class type is not allowed > >> exc->retval = 0.0; > >> > >> icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. > >> -I../../src/include -I../../src/include -I/usr/local/include > >> -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip > >> -mp -c flexiblas.c -o flexiblas.o > >> icc: command line remark #10148: option '-mp' not supported > >> compilation aborted for arithmetic.c (code 2) > >> make[3]: *** [../../Makeconf:129: arithmetic.o] Error 2 > >> make[3]: *** Waiting for unfinished jobs.... > >> icc: command line remark #10148: option '-mp' not supported > >> make[3]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src/main' > >> make[2]: *** [Makefile:140: R] Error 2 > >> make[2]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src/main' > >> make[1]: *** [Makefile:28: R] Error 1 > >> make[1]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src' > >> make: *** [Makefile:62: R] Error 1 > >> > >> with oneapi-2022.1.0/compiler-rt/2022.1.0; > >> oneapi-2022.1.0/mkl/2022.1.0 while building R-4.3.1 on redhat 8.4 > >> glibc2.28-189 > >> > >> I followed a workaround proposed: > >> > https://community.intel.com/t5/Intel-C-Compiler/Error-when-compiling-R-from-source-code-ubuntu-18-04/m-p/1176401/thread-id/36575 > < > https://community.intel.com/t5/Intel-C-Compiler/Error-when-compiling-R-from-source-code-ubuntu-18-04/m-p/1176401/thread-id/36575 > > > >> > >> Deactivate HAVE_MATHERR macro in src/include/config.h > > > > Hi Giuseppe, > > > > thanks for the report. Undefining HAVE_MATHERR seems a valid work-around > > to me, based on reading the thread above and the sources. > > > > We could improve this in R, if keeping this code, at least improve the > > configure check so that it also tests for the presence of the macros. > > > >> Using this workaroud I get R with: > >> > >> BLAS/LAPACK: > >> > /opt/intel/oneapi_2022.2.0/mkl/2022.1.0/lib/intel64/libmkl_intel_lp64.so.2; > LAPACK version 3.9.0 > >> > >> is correct? > >> > >> Is these a way to avoid arithmetic issue? > >> > >> My configure is: > >> > >> module load intel-2021.6.0/2021.6.0 oneapi-2022.1.0/mkl > >> MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core > >> -lmkl_gnu_thread -dl -fopenmp" > >> export CC="icc -std=c99" > >> export CFLAGS="-g -O3 -wd188 -ip -mp" > >> export FC=ifort > >> export FLAGS="-g -O3 -mp" > >> export CXX=icpc > >> export CXXFLAGS="-g -O3 -mp" > >> SHLIB_CXXLD=icpc > >> export MKL_INTERFACE_LAYER=GNU,LP64 > >> export MKL_THREADING_LAYER=GNU > >> ./configure --prefix=/opt/intel-2021.6.0/R/4.3.1 --with-blas="$MKL" > >> --with-lapack --enable-memory-profiling --enable-BLAS-shlib > >> --enable-R-shlib --enable-R-static-lib --with-pcre2 > > > > AFAIK, neither icc nor MKL is regularly tested with R/CRAN packages, so > > the risk of running into some issues is somewhat higher than for say GCC > > and the reference BLAS/LAPACK. > > > > Some hints on using icc and MKL can be found in the R Admin manual, > > https://cran.r-project.org/doc/manuals/r-release/R-admin.html. Unless > > you have done that already, you might want to check your configuration > > against those, I didn't spot any obvious issue. If you find any other > > problem, please report, so that it could be fixed or the hints updated. > > > > Thanks, > > Tomas > > > >> > >> Thanks a lot, > >> Giuseppe. > >> > >> ——————————————————————————————————————— > >> Giuseppe Calò > >> > >> Fondazione CMCC > >> Centro Euro-Mediterraneo sui Cambiamenti Climatici presso Complesso > >> Ecotekne > >> Università del Salento - Strada Prov.le Lecce - Monteroni 73100 Lecce > IT > >> http://www.cmcc.it <http://www.cmcc.it/> > >> https://goo.gl/maps/wtahPDbNVen > >> > >> mobile: (+39) 3208190020 > >> email: giuseppe.c...@cmcc.it > >> > >> Le informazioni contenute in questo messaggio di posta elettronica e > >> negli allegati se presenti sono riservate e confidenziali: ne è > >> vietata la diffusione in qualsiasi modo o forma (GDPR 2016/679). > >> Qualora lei non fosse il destinatario del messaggio, la invito a non > >> diffonderlo e ad eliminarlo dandone gentilmente comunicazione al > >> mittente. > >> > >> The information included in this e-mail and any attachments are > >> confidential and may also be privileged (GDPR 2016/679). > >> If you are not the correct recipient, you are kindly requested to > >> notify the sender immediately, to cancel it and not disclose the > >> contents to any other person. > >> > >> > >> > >> > >> > >> [[alternative HTML version deleted]] > >> > >> ______________________________________________ > >> R-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/r-devel > > > > ______________________________________________ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- > Brian D. Ripley, rip...@stats.ox.ac.uk > Emeritus Professor of Applied Statistics, University of Oxford > > -- -------------------------------------------------------------------- Giuseppe Calò Fondazione CMCC - Supercomputing Center presso Complesso Ecotekne - Università del Salento Prov.le Lecce - Monteroni - 73100 Lecce IT http://www.cmcc.it/supercomputingcenter Mobile (+39) 320 8190020 Mail giuseppe.c...@cmcc.it -------------------------------------------------------------------- [[alternative HTML version deleted]] ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
