G'day all,
I have daily scripts running to install the patched version of the
current R version and the development version of R on my linux box
(Ubuntu 24.04.1 LTS).
The last development version that was successfully compiled and
installed on my machine is "R Under development (unstable) (2024-12-31
r87500)". Since then the script always fails on one of the regression
tests; details are in the attached file R-CheckLog.txt.
I also include a file (R-Script.txt) which shows why this test fails on
my machine using the last R development version that did install on
my machine. It seems the command 'si$LAPACK <- ""' introduces an extra
line in the output of 'capture.output(si)' which then leads to an error
message in 'which(osi != osi.noLA)'.
Sorry, but I do not have any good idea/suggestion how this issue could
be fixed.
Cheers,
Berwin
running code in '../../R-devel-src/tests/reg-tests-1e.R' ... FAILED
==> reg-tests-1e.Rout.fail <==
> ## sessionInfo() *prints* La_version() when not empty
> si <- sessionInfo()
> str( osi <- capture.output(si)); hasLA <- nzchar(si$LAPACK); si$LAPACK <- ""
chr [1:18] "R Under development (unstable) (2025-01-20 r87609)" ...
> osi.noLA <- capture.output(si)
> iLA <- which(osi != osi.noLA)
Error in osi != osi.noLA :
(converted from warning) longer object length is not a multiple of shorter
object length
Calls: which
Execution halted
R Under development (unstable) (2024-12-31 r87500) -- "Unsuffered Consequences"
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[Previously saved workspace restored]
> si0 <- si <- sessionInfo()
> str( osi <- capture.output(si)); hasLA <- nzchar(si$LAPACK); si$LAPACK <- ""
chr [1:20] "R Under development (unstable) (2024-12-31 r87500)" "Platform:
x86_64-pc-linux-gnu" ...
> osi.noLA <- capture.output(si)
> iLA <- which(osi != osi.noLA)
Warning message:
In osi != osi.noLA :
longer object length is not a multiple of shorter object length
> length(osi)
[1] 20
> length(osi.noLA)
[1] 21
> osi
[1] "R Under development (unstable) (2024-12-31 r87500)"
[2] "Platform: x86_64-pc-linux-gnu"
[3] "Running under: Ubuntu 24.04.1 LTS"
[4] ""
[5] "Matrix products: default"
[6] "BLAS/LAPACK:
/usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK
version 3.12.0"
[7] ""
[8] "locale:"
[9] " [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
LC_TIME=en_AU.UTF-8 LC_COLLATE=C "
[10] " [5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8
LC_PAPER=en_AU.UTF-8 LC_NAME=C "
[11] " [9] LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C "
[12] ""
[13] "time zone: Australia/Perth"
[14] "tzcode source: system (glibc)"
[15] ""
[16] "attached base packages:"
[17] "[1] stats graphics grDevices utils datasets methods base
"
[18] ""
[19] "loaded via a namespace (and not attached):"
[20] "[1] compiler_4.5.0"
> osi.noLA
[1] "R Under development (unstable) (2024-12-31 r87500)"
[2] "Platform: x86_64-pc-linux-gnu"
[3] "Running under: Ubuntu 24.04.1 LTS"
[4] ""
[5] "Matrix products: default"
[6] "BLAS:
/usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so "
[7] " LAPACK version 3.12.0"
[8] ""
[9] "locale:"
[10] " [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
LC_TIME=en_AU.UTF-8 LC_COLLATE=C "
[11] " [5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8
LC_PAPER=en_AU.UTF-8 LC_NAME=C "
[12] " [9] LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C "
[13] ""
[14] "time zone: Australia/Perth"
[15] "tzcode source: system (glibc)"
[16] ""
[17] "attached base packages:"
[18] "[1] stats graphics grDevices utils datasets methods base
"
[19] ""
[20] "loaded via a namespace (and not attached):"
[21] "[1] compiler_4.5.0"
> si0
R Under development (unstable) (2024-12-31 r87500)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS/LAPACK:
/usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK
version 3.12.0
locale:
[1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C LC_TIME=en_AU.UTF-8
LC_COLLATE=C
[5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8 LC_PAPER=en_AU.UTF-8
LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
time zone: Australia/Perth
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.5.0
> str(si0)
List of 13
$ R.version :List of 14
..$ platform : chr "x86_64-pc-linux-gnu"
..$ arch : chr "x86_64"
..$ os : chr "linux-gnu"
..$ system : chr "x86_64, linux-gnu"
..$ status : chr "Under development (unstable)"
..$ major : chr "4"
..$ minor : chr "5.0"
..$ year : chr "2024"
..$ month : chr "12"
..$ day : chr "31"
..$ svn rev : chr "87500"
..$ language : chr "R"
..$ version.string: chr "R Under development (unstable) (2024-12-31 r87500)"
..$ nickname : chr "Unsuffered Consequences"
$ platform : chr "x86_64-pc-linux-gnu"
$ locale : chr
"LC_CTYPE=en_AU.UTF-8;LC_NUMERIC=C;LC_TIME=en_AU.UTF-8;LC_COLLATE=C;LC_MONETARY=en_AU.UTF-8;LC_MESSAGES=en_AU.UT"|
__truncated__
$ tzone : chr "Australia/Perth"
$ tzcode_type: chr "system (glibc)"
$ running : chr "Ubuntu 24.04.1 LTS"
$ RNGkind : chr [1:3] "Mersenne-Twister" "Inversion" "Rejection"
$ basePkgs : chr [1:7] "stats" "graphics" "grDevices" "utils" ...
$ loadedOnly :List of 1
..$ compiler:List of 10
.. ..$ Package : chr "compiler"
.. ..$ Version : chr "4.5.0"
.. ..$ Priority : chr "base"
.. ..$ Title : chr "The R Compiler Package"
.. ..$ Author : chr "Luke Tierney <luke-tier...@uiowa.edu>"
.. ..$ Maintainer : chr "R Core Team <do-use-contact-addr...@r-project.org>"
.. ..$ Contact : chr "R-help mailing list <r-h...@r-project.org>"
.. ..$ Description: chr "Byte code compiler for R."
.. ..$ License : chr "Part of R 4.5.0"
.. ..$ Built : chr "R 4.5.0; ; 2024-12-31 20:44:59 UTC; unix"
.. ..- attr(*, "class")= chr "packageDescription"
.. ..- attr(*, "file")= chr
"/opt/R/R-devel/lib/R/library/compiler/Meta/package.rds"
$ matprod : chr "default"
$ BLAS : chr
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so"
$ LAPACK : chr
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so"
$ LA_version : chr "3.12.0"
- attr(*, "class")= chr "sessionInfo"
> si
R Under development (unstable) (2024-12-31 r87500)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so
LAPACK version 3.12.0
locale:
[1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C LC_TIME=en_AU.UTF-8
LC_COLLATE=C
[5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8 LC_PAPER=en_AU.UTF-8
LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
time zone: Australia/Perth
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.5.0
> str(si)
List of 13
$ R.version :List of 14
..$ platform : chr "x86_64-pc-linux-gnu"
..$ arch : chr "x86_64"
..$ os : chr "linux-gnu"
..$ system : chr "x86_64, linux-gnu"
..$ status : chr "Under development (unstable)"
..$ major : chr "4"
..$ minor : chr "5.0"
..$ year : chr "2024"
..$ month : chr "12"
..$ day : chr "31"
..$ svn rev : chr "87500"
..$ language : chr "R"
..$ version.string: chr "R Under development (unstable) (2024-12-31 r87500)"
..$ nickname : chr "Unsuffered Consequences"
$ platform : chr "x86_64-pc-linux-gnu"
$ locale : chr
"LC_CTYPE=en_AU.UTF-8;LC_NUMERIC=C;LC_TIME=en_AU.UTF-8;LC_COLLATE=C;LC_MONETARY=en_AU.UTF-8;LC_MESSAGES=en_AU.UT"|
__truncated__
$ tzone : chr "Australia/Perth"
$ tzcode_type: chr "system (glibc)"
$ running : chr "Ubuntu 24.04.1 LTS"
$ RNGkind : chr [1:3] "Mersenne-Twister" "Inversion" "Rejection"
$ basePkgs : chr [1:7] "stats" "graphics" "grDevices" "utils" ...
$ loadedOnly :List of 1
..$ compiler:List of 10
.. ..$ Package : chr "compiler"
.. ..$ Version : chr "4.5.0"
.. ..$ Priority : chr "base"
.. ..$ Title : chr "The R Compiler Package"
.. ..$ Author : chr "Luke Tierney <luke-tier...@uiowa.edu>"
.. ..$ Maintainer : chr "R Core Team <do-use-contact-addr...@r-project.org>"
.. ..$ Contact : chr "R-help mailing list <r-h...@r-project.org>"
.. ..$ Description: chr "Byte code compiler for R."
.. ..$ License : chr "Part of R 4.5.0"
.. ..$ Built : chr "R 4.5.0; ; 2024-12-31 20:44:59 UTC; unix"
.. ..- attr(*, "class")= chr "packageDescription"
.. ..- attr(*, "file")= chr
"/opt/R/R-devel/lib/R/library/compiler/Meta/package.rds"
$ matprod : chr "default"
$ BLAS : chr
"/usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so"
$ LAPACK : chr ""
$ LA_version : chr "3.12.0"
- attr(*, "class")= chr "sessionInfo"
>
> Save workspace image? [y/n/c]: n
Process R finished at Tue Jan 21 13:01:46 2025
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