Yes, thanks. I have a corrected version checked out. It has some other
changes--as soon as I make a cleaned-up version with this fix only, I'll
commit it.
John
[EMAIL PROTECTED] wrote:
>
> Full_Name: Colin A. Smith
> Version: 1.8.0
> OS: Mac OS X 10.2.6
> Submission from: (NULL) (128.102.184.81)
>
> annaffy 1.0.1 (in BioC CVS) fails to load. annaffy 1.0 (on the BioC web site)
> has the same problem.
>
> It looks like the load is failing because of a bug in completeSubclasses() in
> r-devel. It calls setIs() and doesn't specify an environment via the "where"
> argument. setIs() "where" defaults to topEnv() and fails because "aafGO" doesn't
> exist in that environment and "list" is sealed.
>
> completeSubclasses should be specifying my package for "where" instead of using
> the default.
>
> > library(annaffy)
> Error in setIs(class2, [EMAIL PROTECTED], extensionObject = obji, doComplete =
> FALSE) :
> Cannot create a setIs relation when neither of the classes ("aafGO" and
> "list") is local and modifiable in this package
> Error in setClass("aafGO", "aafList", prototype = list(), where = where) :
> Error in contained classes ("aafList") for class "aafGO"; class
> definition removed from "annaffy"
> Error in library(annaffy) : .First.lib failed
>
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--
John M. Chambers [EMAIL PROTECTED]
Bell Labs, Lucent Technologies office: (908)582-2681
700 Mountain Avenue, Room 2C-282 fax: (908)582-3340
Murray Hill, NJ 07974 web: http://www.cs.bell-labs.com/~jmc
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