Getting a crash with R1.8.1 on windows 2000 an linux with the strsplit. Version: platform = i386-pc-mingw32 arch = i386 os = mingw32 system = i386, mingw32 status = major = 1 minor = 8.1 year = 2003 month = 11 day = 21 language = R
Version: platform = i386-pc-mingw32 arch = i386 os = mingw32 system = i386, mingw32 status = major = 1 minor = 8.1 year = 2003 month = 11 day = 21 language = R The code causing the crash is given below. Eryk. res <- "HTTP/1.1 200 OK\r\nDate: Thu, 19 Feb 2004 17:55:04 GMT\r\nServer: Apache/1.3.26 (Win32)\r\nTransfer-Encoding: chunked\r\nContent-Type: text/html; charset=ISO-8859-1\r\n\r\nf5b\r\n\n<HTML>\n<HEAD>\n<TITLE>Mascot Search Results: Protein View</TITLE>\n</HEAD>\n\n<BODY BGCOLOR=\"#ffffff\" ALINK=\"#0000ff\" VLINK=\"#0000ff\">\n\n<H1><IMG SRC=\"../images/88x31_logo_white.gif\" WIDTH=\"88\" HEIGHT=\"31\"\nALIGN=\"TOP\" BORDER=\"0\" NATURALSIZEFLAG=\"3\"> Mascot Search Results</H1>\n\n<H3>Protein View</H3>\n<FORM METHOD=\"POST\">\n<INPUT TYPE=\"hidden\" NAME=\"file\" VALUE=\"../data/20040219/F253567.dat\">\n<INPUT TYPE=\"hidden\" NAME=\"hit\" VALUE=\"1\">\n<INPUT TYPE=\"hidden\" NAME=\"showall\" VALUE=\"true\">\n<INPUT TYPE=\"hidden\" NAME=\"protscore\" VALUE=\"0\">\n<FONT FACE='Courier New,Courier,monospace'><PRE>Match to: <B>At1g61780</B>; Score: <B>15</B>\n<B>hypothetical protein</B>\n\nNominal mass (M<SUB>r</SUB>): <B>11619</B>; Calculated pI value: <B>9.43</B>\nNCBI BLA! ST search of <A HREF=\"http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?ALIGNMENTS=50&ALIGNMENT_VIEW=Pairwise&AUTO_FORMAT=Semiauto&CDD_SEARCH=on&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=(none)&EXPECT=10&FILTER=L&FORMAT_BLOCK_ON_RESPAGE=None&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&GAPCOSTS=11+1&I_THRESH=0.001&LAYOUT=TwoWindows&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&QUERY=MVCDKCEKKLSKVIVPDKWKDGARNVTEGGGRKINENKLLSKKNRWSPYSTCTTKCMICKQQVHQDGKYCHTCAYSKGVCAMCGKQVLDTKMYKQSNV&SERVICE=plain&SET_DEFAULTS.x=9&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&WORD_SIZE=3&END_OF_HTTPGET=Yes\" TARGET=\"_blank\">At1g61780</A> against nr\nUnformatted <A HREF=\"../cgi/getseq.pl?GabiMips+At1g61780+seq\" TARGET=\"_blank\">sequence string</A> for pasting into other applications\n\nFixed modifications: Carbamidomethyl (C)\nVariable modifications: Oxidation (M)\nCleavage by Trypsin: cuts C-term side of KR unless next residue is P\nNumber of mass value! s searched: <B>6</B>\nNumber of mass values matched: <B>1</B>\! nSequenc e Coverage: <B>8%</B>\n\nMatched peptides shown in <B><FONT COLOR=#FF0000>Bold Red</FONT></B>\n\n <B>1</B> MVCDKCEKKL SKVIVPDKWK DGARNVTEGG GRKINENKLL SKKNRWSPYS <B>\n 51</B> TCTTKCMICK QQVHQDGKYC HTCAYSK<B><FONT COLOR=#FF0000>GVC AMCGK</FONT></B>QVLDT KMYKQSNV\n</PRE></FONT>\n<P><INPUT TYPE=\"submit\" VALUE=\"Show matched peptides only\" \n onClick=\"this.form.showall.value='false'; return true\">\n<P><INPUT TYPE=\"submit\" VALUE=\"Sort Peptides By\"> \n<INPUT TYPE=\"radio\" NAME=\"sort\" VALUE=\"startup\" checked>Residue Number \n<INPUT TYPE=\"radio\" NAME=\"sort\" VALUE=\"massup\" >Increasing Mass \n<INPUT TYPE=\"radio\" NAME=\"sort\" VALUE=\"massdown\" >Decreasing Mass \n<FONT FACE='Courier New,Courier,monospace'><PRE>\n<B> Start - End Observed Mr(expt) Mr(calc) Delta Miss Sequence</B>\n<FONT COLOR=#000000> 1 - 1 149.05 0 M </FONT> \n<FONT COLOR=#000000> 1 - 5 ! 651.27 0 MVCDK </FONT> \n<FONT COLOR=#000000> 1 - 8 1068.44 1 MVCDKCEK </FONT> \n<FONT COLOR=#000000> 2 - 5 520.23 0 VCDK </FONT> \n<FONT COLOR=#000000> 2 - 8 937.40 1 VCDKCEK </FONT> \n<FONT COLOR=#000000> 6 - 8 435.18 0 CEK </FONT> \n<FONT COLOR=#000000> 6 - 9 563.27 1 CEKK </FONT> \n<FONT COLOR=#000000> 9 - 9 146.11 0 K </FONT> \n<FONT COLOR=#000000> 9 - 12 474.32 1 KLSK </FONT> \n<FONT COLOR=#000000> 10 - 12 346.22 0 LSK </FONT> \n<FONT COLOR=#000000> 10 - 18 ! 997.62 1 LSKVIVPDK </FONT> \n<FO! NT COLOR =#000000> 13 - 18 669.41 0 VIVPDK </FONT> \n<FONT COLOR=#000000> 13 - 20  \r\nf78\r\n; 983.58 1 VIVPDKWK </FONT> \n<FONT COLOR=#000000> 19 - 20 332.18 0 WK </FONT> \n<FONT COLOR=#000000> 19 - 24 731.37 1 WKDGAR </FONT> \n<FONT COLOR=#000000> 21 - 24 417.20 0 DGAR </FONT> \n<FONT COLOR=#000000> 21 - 32 1187.56 1 DGARNVTEGGGR </FONT> \n<FONT COLOR=#000000> 25 - 32 788.38 0 NVTEGGGR </FONT> \n<FONT COLOR=#000000> 25 - 33 916.47 1 NVTEGGGRK </FONT> \n<FONT COLOR=#000000> 33 - 33 146.11 0 K </FONT>! \n<FONT COLOR=#000000> 33 - 38 744.41 1 KINENK </FONT> \n<FONT COLOR=#000000> 34 - 38 616.32 0 INENK </FONT> \n<FONT COLOR=#000000> 34 - 42 1057.61 1 INENKLLSK </FONT> \n<FONT COLOR=#000000> 39 - 42 459.31 0 LLSK </FONT> \n<FONT COLOR=#000000> 39 - 43 587.40 1 LLSKK </FONT> \n<FONT COLOR=#000000> 43 - 43 146.11 0 K </FONT> \n<FONT COLOR=#000000> 43 - 45 416.25 1 KNR </FONT> \n<FONT COLOR=#000000> 44 - 45 288.15 0 NR </FONT> \n<FONT COLOR=#000000> 44 - 55 1499.68 1 NRWSPYSTCTTK </FONT> \n<F! ONT COLOR=#000000> 46 - 55 ! 1229.54 0 WSPYSTCTTK </FONT> \n<FONT COLOR=#000000> 46 - 60 1921.82 1 WSPYSTCTTKCMICK </FONT> \n<FONT COLOR=#000000> 56 - 60 710.29 0 CMICK </FONT> \n<FONT COLOR=#000000> 56 - 68 1630.74 1 CMICKQQVHQDGK </FONT> \n<FONT COLOR=#000000> 61 - 68 938.46 0 QQVHQDGK </FONT> \n<FONT COLOR=#000000> 61 - 77 2108.92 1 QQVHQDGKYCHTCAYSK </FONT> \n<FONT COLOR=#000000> 69 - 77 1188.47 0 YCHTCAYSK </FONT> \n<FONT COLOR=#000000> 69 - 85 2051.81 1 YCHTCAYSKGVCAMCGK </FONT> \n<B><FONT COLOR=#FF0000> 78 - 85 882.30 881.29 881.36 -0.06 0 GVCAMCGK </FONT></B> \n<FONT COLOR=#000000> 78 - 91! 1565.74 1 GVCAMCGKQVLDTK </FONT> \n<FONT COLOR=#000000> 86 - 91 702.39 0 QVLDTK </FONT> \n<FONT COLOR=#000000> 86 - 94 1124.59 1 QVLDTKMYK </FONT> \n<FONT COLOR=#000000> 92 - 94 440.21 0 MYK </FONT> \n<FONT COLOR=#000000> 92 - 98 868.41 1 MYKQSNV </FONT> \n<FONT COLOR=#000000> 95 - 98 446.21 0 QSNV </FONT> \n\n<B>No match to:</B> 742.10, 758.09, 816.95, 832.89, 864.11\n<P><IMG SRC=\"mass_error.pl?file=../data/20040219/F253567.dat&px=&units=ppm&hit=1\" WIDTH=450 HEIGHT=150 ALT=\"Error Distribution\">\n</FORM><HR>\nNo source defined for full-text report\n</PRE></FONT>\n<P><TABL" rget<- gsub("\r\n[0-9a-z]+\r\n","",res,perl=T) rtmp <- strsplit(rget,"\n")[[1]] ______________________________________________ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
