Dear list,
I just hit an error that stopped my make && make check-devel operation on my linux box (FC3, i686 P4 2GB RAM). Just to note that I've been building the development branch(?) for some time and this is the first hint of a problem.
1) updated the src tree using svn update 2) ran ../configure --with-recommended-package=no from my build directory 3) got: R is now configured for i686-pc-linux-gnu
Source directory: ../src Installation directory: /usr/local
C compiler: gcc -O3 -g -march=i386 -mcpu=i686 C++ compiler: g++ -O3 -g -march=i386 -mcpu=i686 Fortran compiler: g77 -O3 -g -march=i386 -mcpu=i686
Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic) Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: R profiling
Recommended packages: no
Note I've editted config.site to compile with optimisations -O3
4) did make && make check-devel and get this:
...
make[5]: Entering directory `/home/gavin/R/devel/build/src/library'
>>> Building/Updating help pages for package 'graphics'
Formats: text html latex example
make[5]: Leaving directory `/home/gavin/R/devel/build/src/library'
running code in 'graphics-Ex.R' ... OK
collecting examples for package 'stats' ...
make[5]: Entering directory `/home/gavin/R/devel/build/src/library'
>>> Building/Updating help pages for package 'stats'
Formats: text html latex example
make[5]: Leaving directory `/home/gavin/R/devel/build/src/library'
running code in 'stats-Ex.R' ...make[4]: *** [stats-Ex.Rout] Error 1
make[4]: Leaving directory `/home/gavin/R/devel/build/tests/Examples'
make[3]: *** [test-Examples-Base] Error 2
make[3]: Leaving directory `/home/gavin/R/devel/build/tests/Examples'
make[2]: *** [test-Examples] Error 2
make[2]: Leaving directory `/home/gavin/R/devel/build/tests'
make[1]: *** [test-all-basics] Error 1
make[1]: Leaving directory `/home/gavin/R/devel/build/tests'
make: *** [check-devel] Error 25) Looking at stats-Ex.Rout.fail I see this at the end:
>
> ### Name: confint
> ### Title: Confidence Intervals for Model Parameters
> ### Aliases: confint confint.default
> ### Keywords: models
>
> ### ** Examples
>
> fit <- lm(100/mpg ~ disp + hp + wt + am, data=mtcars)
> confint(fit)
2.5 % 97.5 %
(Intercept) -0.774822875 2.256118188
disp -0.002867999 0.008273849
hp -0.001400580 0.011949674
wt 0.380088737 1.622517536
am -0.614677730 0.926307310
> confint(fit, "wt")
2.5 % 97.5 %
wt 0.3800887 1.622518
>
> ## from example(glm)
> counts <- c(18,17,15,20,10,20,25,13,12)
> outcome <- gl(3,1,9); treatment <- gl(3,3)
> glm.D93 <- glm(counts ~ outcome + treatment, family=poisson())
> confint(glm.D93)
Error in loadNamespace(name) : there is no package called 'MASS'
Execution haltedBut as there are no recommended packages this fails as indicated. So is there something wrong with what I'm doing (i.e. something recent in the last week has changed that I missed in NEWS) or is this a bug in the tests or examples?
Cheers
Gav -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [T] +44 (0)20 7679 5522 ENSIS Research Fellow [F] +44 (0)20 7679 7565 ENSIS Ltd. & ECRC [E] gavin.simpsonATNOSPAMucl.ac.uk UCL Department of Geography [W] http://www.ucl.ac.uk/~ucfagls/cv/ 26 Bedford Way [W] http://www.ucl.ac.uk/~ucfagls/ London. WC1H 0AP. %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
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